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Meal Type ยป Gluten Free Cakes & Cupcakes ยป Gluten Free Carrot Cake Cupcakes

Gluten Free Carrot Cake Cupcakes

Claire Cary

By

Claire Cary

5 from 3 votes
February 20, 2026
Jump to Recipe

These gluten free carrot cake cupcakes are moist, tender, easy to make and topped with a homemade cream cheese frosting. They’re the perfect Easter dessert or just a fun Spring recipe!

gluten free carrot cake cupcakes on a wood board with cream cheese frosting.

It’s carrot cake season! While I love a full blown gluten free carrot cake, sometimes cupcakes are a better approach for smaller gatherings. These gluten free carrot cake cupcakes are moist, tender, packed with flavor, fresh carrots and topped with a simple cream cheese buttercream.

I opted to make these nut free, but you can definitely add in some chopped walnuts or pecans if you like a bit more of a crunch. These cupcakes are dairy free optional and I promise you will not be able to tell they are gluten free! If you love this recipe, try my gluten free carrot cake banana bread next!

ingredients in bowls with labels

How to make gluten free carrot cake cupcakes

Preheat the oven to 350 degrees Fahrenheit. Line a 12 cavity cupcake tin with liners and set aside. In a medium mixing bowl or bowl of a stand mixer, combine all wet ingredients. Beat on medium/low speed until well combined.

Add in the dry ingredients, aside from the carrots, and beat just until combined. Fold in the carrots until well incorporated.

wet ingredients in a bowl

Scoop into the prepared tin, filling each about 3/4 of the way full. Bake for 20-24 minutes or until a toothpick comes out clean. let cool in the tin for about 15 minutes, then transfer to a wire rack to finish cooling.

Meanwhile, prep the frosting. Add the cream cheese and butter to a mixing bowl or bowl of a stand mixer. Beat for about 2 minutes. Add in the powdered sugar and beat until combined, about another full minute. Add in the vanilla and salt and mix until combined.

Once the cupcakes have cooled completely, frost using a piping bag or just a cake knife. Enjoy and try my carrot cake muffins next!

batter in a bowl with a spoon

Key ingredients and swaps

FLOUR. I used the Bob’s Red Mill GF 1:1 All Purpose Baking Flour for this recipe which I recommend, though King Arthur also works well.

SUGAR. A mix of white sugar and brown sugar add such a nice flavor to these gluten free carrot cake cupcakes. I do not recommend any liquid sweeteners here, but you can safely sub with coconut sugar. Keep in mind the color will be darker if you use all coconut sugar.

OIL & BUTTER. Any plain, neutral flavored oil will work here and then either dairy or dairy free butter. The butter as a richer flavor, but the oil keeps the texture nice and light.

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MILK. Dairy or non-dairy milk works well here!

SPICES. Cinnamon, nutmeg, ginger and cloves make up the delicious carrot cake favor.

EGGS. Two eggs will help bind all ingredients together and help make the cupcakes nice and fluffy.

CARROTS. I highly recommend using freshly grated carrots and not pre-grated carrots from the grocery store. Those tend to be a bit drier and can change the texture a bit.

batter in the pan before baking

How to store and freeze

Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container in the fridge for best results. Keeping them sealed will ensure these cupcakes stay nice and moist. Usually I suggest keeping cupcakes on the counter, but because of the cream cheese in the frosting, they will keep for longer in the fridge.

To freeze, you will want to do so before they are frosted. Just let cool, place in a freezer safe bag and freeze for up to 1 month. Let thaw before frosting and serving.

bite taken out of the gluten free carrot cake cupcake to show texture

Tips to keep gluten free cupcakes moist

These gluten free carrot cake cupcakes are made extra moist with the help of some milk, eggs, butter and oil. Gluten free desserts definitely have a reputation of being dry (because they can be) but I promise these are anything but!

These cupcakes will be (and stay) nice and moist as long as they are not over baked and store properly. Be sure to bake just until a toothpick comes out clean and keep them in a container so they don’t dry out.

gluten free carrot cake cupcakes with the wrapper pulled off

More gluten free cupcake recipes!

  • Matcha Cupcakes
  • Lemon Poppyseed Cupcakes
  • Almond Flour Cupcakes
  • Gluten Free Red Velvet Cupcakes

If you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, tag me on instagram if you make this recipe so I can see your creation!

5 from 3 votes

Gluten Free Carrot Cake Cupcakes

by: claire cary

These gluten free carrot cake cupcakes are moist, tender, easy to make and topped with a homemade cream cheese frosting. They’re the perfect Easter dessert or just a fun Spring recipe!
/ /
Prep: 15 minutes mins
Cook: 20 minutes mins
Total: 35 minutes mins
12

Equipment

  • Cupcake tin

Ingredients

Wet

  • ½ cup white sugar
  • ½ cup dark brown sugar
  • ½ cup oil
  • ⅓ cup milk
  • 2 eggs
  • 1 teaspoon vanilla extract

Dry

  • 1 ½ cups gluten free all purpose baking flour
  • 1 ½ teaspoons baking powder
  • ½ teaspoon salt
  • 1 ¼ teaspoon cinnamon
  • ½ teaspoon ginger
  • ½ teaspoon nutmeg
  • ¼ teaspoon cloves
  • 1 ¼ cup freshly grated carrots

Cream Cheese Buttercream

  • 8 ounces cream cheese block not tub, room temperature
  • ½ cup butter room temperature
  • 3 cups powdered sugar
  • 1 teaspoon vanilla extract
  • ⅛ teaspoon salt
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit. Line a 12 cavity cupcake tin with liners and set aside.
  • In a medium mixing bowl or bowl of a stand mixer, combine all wet ingredients. Beat on medium/low speed until well combined.
  • Add in the dry ingredients, aside from the carrots, and beat just until combined. Fold in the carrots until well incorporated.
  • Scoop into the prepared tin, filling each about 3/4 of the way full. Bake for 20-24 minutes or until a toothpick comes out clean. let cool in the tin for about 15 minutes, then transfer to a wire rack to finish cooling.
  • Meanwhile, prep the frosting. Add the cream cheese and butter to a mixing bowl or bowl of a stand mixer. Beat for about 2 minutes. Add in the powdered sugar and beat until combined, about another full minute. Add in the vanilla and salt and mix until combined.
  • Once the cupcakes have cooled completely, frost using a piping bag or just a cake knife. Enjoy!

Notes

Feel free to add in some chopped nuts as well! I like walnuts here, about 1/2 cup chopped. 
Serving: 1cupcake, with frosting / Calories: 422kcal / Carbohydrates: 60g / Protein: 6g / Fat: 19g / Saturated Fat: 3g / Polyunsaturated Fat: 5g / Monounsaturated Fat: 10g / Trans Fat: 0.04g / Cholesterol: 30mg / Sodium: 412mg / Potassium: 93mg / Fiber: 2g / Sugar: 49g / Vitamin A: 400IU / Vitamin C: 0.03mg / Calcium: 132mg / Iron: 1mg

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Gluten Free Carrot Cake
  2. Gluten Free Pound Cake
  3. Gluten Free Coffee Cake
  4. Gluten Free Lemon Drizzle Cake
5 from 3 votes

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Comments

  1. Debbie Johnson
    April 7, 2026

    Wow!! Our family was blown
    away at these moist and flavorful cupcakes. We all love carrot cake and my sonโ€™s girlfriend is gluten free. I wanted an Easter dessert that she could enjoy with us. These were easy to make and delicious! I added pecans to the batter and icing for half of them and loved them. A new favorite recipe!5 stars

    Reply
  2. Tammy Atherton
    April 7, 2026

    I made these for Easter and they were amazing! Followed the recipe exactly, except I added a tiny amount (probably less than 1/4 c) of applesauce. I will try the banana carrot cake bread next!5 stars

    Reply
  3. Patty Wiest
    April 2, 2026

    Absolutely fabulous recipe; a big hit
    I added walnuts and raisins
    Next time I will 1/2 the icing recipeโ€ฆ. Had plenty left over5 stars

    Reply
    1. Claire Cary
      April 2, 2026

      Amazing, thanks Patty!

      Reply
  4. ashley
    March 1, 2026

    hi! iโ€™m making these now.. it says 29-23min. how long do you bake these at 350?

    Reply
    1. Claire Cary
      March 2, 2026

      Sorry about that! Typo and should say 20-24 minutes. Let us know how they turned out!

      Reply
claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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