Subscribe for our FREE 30 minute meals book!

  • Recipes
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
  • Dessert
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
  • Diet
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
  • About
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop

Meal Type » Gluten Free Snacks » Gluten Free Pumpkin Muffins

Gluten Free Pumpkin Muffins

Claire Cary

By

Claire Cary

5 from 36 votes
October 12, 2023
Jump to Recipe

These gluten free pumpkin muffins are the perfect Fall recipe. They’re filled with chocolate chips and topped with cinnamon streusel. They’re light, fluffy and so easy to make!

two gluten free pumpkin muffins stacked on each other with chocolate chips

It’s officially pumpkin season and I for one am so excited. Pumpkin bread, pumpkin cookies, pumpkin pie and these new gluten free pumpkin muffins!

I couldn’t decide between doing chocolate chips or a cinnamon streusel topping, so I opted for both! These muffins have a generous amount of pumpkin for a very soft and tender texture, plus plenty of spice for tons of flavor. They’re perfect for a quick snack or dessert and I promise you’d never tell they’re both gluten and dairy free.

These muffins are made with gluten free all purpose flour and good old sugar, but if you’re looking for a healthy muffin recipe with almond flour, try my sweet potato muffins instead! If you’re really in the Fall baking spirit, my gluten free pumpkin cinnamon rolls and gluten free pumpkin pie always hit the spot.

Tips before we get started!

  • I love these with both the streusel and chocolate chips, but you can opt to do just one or keep the muffins plain! The base recipe has tons of flavor as is.
  • Be sure to use pure pumpkin puree, not pumpkin pie filling.
  • For extra tall muffins, you can bake in two muffin tins and just bake 6 at a time, leaving space between each muffin. This allows the air to circulate better and creates taller muffins.
    ingredients in bowls with labels

    How to make gluten free pumpkin muffins

    WHISK WET. In a large mixing bowl, whisk together all wet ingredients until smooth.

    WHISK DRY. Whisk in the dry ingredients, making sure to spoon and level the flour. Fold in the chocolate chips. Scoop the batter into a muffin tray, filling each to the top to ensure nice round muffin tops.

    MAKE STREUSEL. In a small dish, combine the sugar, flour and pumpkin pie spice. Cut in the butter or coconut oil with a fork until crumbly.

    BAKE. Use your fingers to sprinkle the streusel on top of the muffins. Bake for 28-32 minutes or until a toothpick comes out clean.

    SERVE. Let cool for about 15 minutes in the tray, then remove and transfer to a wire rack to finish cooling and enjoy!

    two images showing how to make the recipe

    WANT TO SAVE THIS RECIPE?

    Enter your email below & we’ll send it straight to your inbox. Plus you’ll get great new recipes from us every week!

    Can I make them vegan?

    You can try subbing the eggs for an egg substitute like flax eggs or a store bought egg replacer, but they likely won’t rise as well. The eggs are important here for a fluffy texture and ensuring a nice rise, so I recommend sticking with the recipe as written for best results!

    Vegan and gluten free baking is very tricky, so it’s usually best to opt for a recipe that is already developed to be that way.

    pumpkin muffins in a muffin tray before going in the oven

    Ingredient swaps

    PUMPKIN. You need pure pumpkin puree for this recipe and it cannot be subbed with pumpkin pie filling. Pumpkin pie filling already contains all the spices, sugar and other ingredients in pumpkin pie, so be sure you’re using just plain pumpkin puree for these muffins. You will need just shy of one 15 ounce can.

    FLOUR. This recipe calls for gluten free all purpose baking flour, which you cannot sub for almond, coconut, oat or another type of flour. You can use regular all purpose flour (non gluten free), but please do not try using another gluten free flour such as almond, oat etc. I like the Bob’s Red Mill 1:1 Baking Flour, just make sure whatever you use has xanthan gum!

    SUGAR. You can sub the light brown sugar for coconut sugar, but I don’t recommend subbing the white sugar for coconut sugar. The muffins will be a very dark color and they may not rise as well. You can always try my healthy sweet potato muffins if you want a lower sugar option!

    up close of one muffin with a bite taken out to show texture

    How to store and freeze

    Once prepared, these gluten free muffins will keep for about 3 days at room temperature, or 5 days in the fridge. They can get a bit soggy if put in an air tight container because of the pumpkin, so I suggest leaving them in a container with the lid slightly ajar or covered loosely with foil.

    You can freeze these gluten free pumpkin muffins after they bake. Be sure to let them cool completely, then transfer to a freezer safe bag and freeze for up to one month. Let them defrost in the fridge overnight, then warm up in the oven or microwave.

    gluten free pumpkin muffins with streusel and glaze on top

    Try these snack recipes next!

    • Matcha Muffins
    • Almond Flour Blueberry Muffins
    • Gluten Free Zucchini Muffins
    • Gluten Free Pumpkin Bread
    • Protein Muffins
    • Mini Chocolate Chip Muffins

    Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, tag me on instagram if you make this recipe so I can see your creation!

    5 from 36 votes

    Gluten Free Pumpkin Muffins

    by: claire cary

    These gluten free pumpkin muffins are the perfect Fall recipe. They’re filled with chocolate chips and topped with cinnamon streusel. They’re light, fluffy and so easy to make!
    / /
    Prep: 15 minutes mins
    Cook: 30 minutes mins
    Total: 45 minutes mins
    12

    Ingredients

    Wet

    • 2 large eggs
    • 6 tablespoons melted butter or coconut oil
    • 1 ½ cups pure pumpkin puree
    • ⅔ cup white sugar
    • ½ cup light brown sugar
    • 2 teaspoons vanilla
    • 1 teaspoon apple cider vinegar

    Dry

    • 1 ¾ cup gluten free all purpose baking flour
    • 1 ½ teaspoons baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon salt
    • ½ teaspoon cinnamon
    • 2 ¾ teaspoons pumpkin pie spice
    • ½ cup chocolate chips

    Streusel

    • 4 tablespoons brown sugar
    • 4 tablespoons gluten free all purpose flour
    • 2 tablespoons butter or coconut oil softened
    • ¼ teaspoon pumpkin pie spice
    US Customary – Metric

    Instructions

    • Preheat the oven to 350 degrees Fahrenheit. Line a muffin tin with 12 liners and set aside.
    • In a large mixing bowl, whisk together all wet ingredients until smooth.
    • Whisk in the dry ingredients, making sure to spoon and level the flour.
    • Fold in the chocolate chips.
    • Scoop the batter into a muffin tray, filling each to the top to ensure nice round muffin tops.
    • In a small dish, combine the sugar, flour and pumpkin pie spice. Cut in the butter or coconut oil with a fork until crumbly.
    • Use your fingers to sprinkle the streusel on top of the muffins. Bake for 28-32 minutes or until a toothpick comes out clean.
    • Let cool for about 15 minutes in the tray, then remove and transfer to a wire rack to finish cooling.

    Notes

    You can sub the light brown sugar for coconut sugar, but I don’t recommend subbing the white sugar for coconut sugar. The muffins will be a very dark color and they may not rise as well. You can always try my healthy sweet potato muffins if you want a lower sugar option!
    This recipe calls for gluten free all purpose flour, which you cannot sub for almond, coconut, oat or another type of flour. You can use regular AP flour (non gluten free), but please do not try using another gluten free flour. I like the Bob’s Red Mill 1:1 Baking Flour, just make sure whatever you use has xanthan gum!
    Serving: 1muffin / Calories: 282kcal / Carbohydrates: 42g / Protein: 4g / Fat: 10g / Saturated Fat: 7g / Fiber: 3g / Sugar: 24g

    Did you make this?

    Mention @eatwithclarity or tag #eatwithclarity!

    Related posts:

    1. Best Gluten Free Banana Bread
    2. Gluten Free Pumpkin Bread
    3. Cinnamon Swirl Oat Flour Banana Bread
    4. Healthy Banana Bread Donuts
    5 from 36 votes (10 ratings without comment)

    leave a comment and rating Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe Rating




    Comments

    1. Julie
      September 23, 2024

      I made this into a cake with cacao and chocolate chips without the pumpkin spices! It was a hit!5 stars

      Reply
    2. Liza
      September 18, 2024

      Wow these were so fantastic! I used coconut oil and subbed 1 egg for a flax egg because I like the texture flax adds and feel it holds moisture well. They were very moist and flavorful; it’s a perfect recipe!5 stars

      Reply
      1. Claire Cary
        September 18, 2024

        Love it! Thanks, Liza!

        Reply
    3. Nancy
      September 1, 2024

      These were sooooo good. I made them almost exactly as the recipe says, but subbed some almond flour for a small portion of the GF. Added dried cranberries instead of chips, and used a method of baking from another favorite recipe where you bake hot for the first five minutes then reduce for the rest, which gives the muffins a nice high dome. My daughter said they were PERFECT.5 stars

      Reply
    4. Denise Kuchinski
      January 11, 2024

      Wow!! These are incredible! My family is not gluten free but they LOVE them! I used plant based butter to make them dairy free as well and sooooo delicious!! Thank you!5 stars

      Reply
      1. Claire Cary
        January 11, 2024

        Amazing, thank you Denise!

        Reply
    5. Molly
      November 21, 2023

      Was craving a pumpkin treat and this recipe delivered. It was simple to make and satisfied my craving. I skipped the topping to cut down on the sugar. I did not miss it.5 stars

      Reply
      1. Claire Cary
        November 30, 2023

        Perfect, thanks Molly!

        Reply
    6. Erin
      November 5, 2023

      Have not tried yet, recommendations for an egg substitute? Making for my niece with an egg allergy amongst other things.5 stars

      Reply
      1. Claire Cary
        November 7, 2023

        I’d try a store bought egg replacer like Bob’s Red Mill or an extra 6 tablespons of pumpkin.

        Reply
    7. Audrey
      October 23, 2023

      These turned out amazing! Even with my tweaks, which I was nervous would not work. I replaced all of the sugar with a stevia/erythritol baking blend to make them low-sugar. I also ran out of my 1:1 GF flour and had to replace the last 1/2 cup with almond flour. They still turned out great! I’m sure they’d be even better with the original ingredients, but I was thrilled with my result. Thanks for the great recipe!5 stars

      Reply
    8. Rebecca
      October 22, 2023

      Easy recipe! Didn’t taste GF. I love gingerbread spicy so I doubled the spices here too and was not disappointed. I also used mini chocolate chips!5 stars

      Reply
      1. Claire Cary
        October 24, 2023

        Thank you, my favorite kind of review!

        Reply
    9. mya
      October 17, 2023

      can i use oat flour instead of gf all purpose flour?

      Reply
      1. Claire Cary
        October 19, 2023

        I don’t recommend that here! You can try my sweet potato muffins instead!

        Reply
    10. Laurie
      October 10, 2023

      These muffins were very good! I like that they’re not too sweet!5 stars

      Reply
      1. Claire Cary
        October 10, 2023

        Thank you, Laurie!

        Reply
    11. Adeline
      September 24, 2023

      Picky eaters approved 👌.5 stars

      Reply
      1. Claire Cary
        September 25, 2023

        The best kind of comment!

        Reply
    12. Pam
      September 12, 2023

      We rate these a 5. My husband even loves them. Thanks so much for putting this and so many more of your recipes out there. Keep them coming.5 stars

      Reply
      1. Claire Cary
        September 13, 2023

        Thank you, Pam!

        Reply
    13. Liah
      October 17, 2022

      These came out so good. I left out chocolate chips, but still so good. If I made this into a loaf, how long would I cook it in the oven?5 stars

      Reply
      1. Claire Cary
        October 31, 2022

        I haven’t tried it as a loaf, but my guess would be about 55-60 minutes.

        Reply
    14. Anita
      October 17, 2022

      Needed a higher oven temperature.375F would have been more normal for muffins. After 32+4 minutes they still were not completely done. Tasted good.5 stars

      Reply
    15. Andrea
      September 28, 2022

      These are incredible! I made 2 batches last week and gave some to neighbors and family, my kids devoured them, everyone loved them. I’m making more right now! Perfect texture, can’t even tell they are GF.5 stars

      Reply
      1. Claire Cary
        October 2, 2022

        Thank you, Andrea!

        Reply
    1 2
    Newer Comments»
    claire cary

    Welcome,
    I’m Claire

    Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


    Read Claire’s Story

    you’ll also love

    • Gluten Free Snack Recipes

      Best Gluten Free Banana Bread

    • Gluten Free Snack Recipes

      Gluten Free Pumpkin Bread

    • Gluten Free Snack Recipes

      Cinnamon Swirl Oat Flour Banana Bread

    • Gluten Free Desserts

      Healthy Banana Bread Donuts

    • Gluten Free Snack Recipes

      Gluten Free Banana Chocolate Chip Muffins

    • Gluten Free Breakfast Recipes

      Gluten Free Bagels

    claire cary of eat with clarity

    get more clarity

    "✦" indicates required fields


    More

    • About
    • eBook
    • Disclaimer
    • Privacy
    • Services

    Recipes

    • Recipe Index
    • Breakfast
    • Desserts
    • Dinner
    • Drinks

    As Seen In

    • Buzzfeed
    • Yahoo!
    • Well + Good
    • Parade
    • Self

    Site by Katelyn Gambler & Made To Thrive

    COPYRIGHT © 2021 · EAT WITH CLARITY, LLC. ALL RIGHTS RESERVED.

    Information from your device can be used to personalize your ad experience.

    Rate This Recipe

    Your vote:




    A rating is required
    A name is required
    An email is required

    Recipe Ratings without Comment

    Something went wrong. Please try again.