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Meal Type » Desserts » Gluten Free Lemon Poppy Seed Cookies

Gluten Free Lemon Poppy Seed Cookies

Claire Cary

By

Claire Cary

5 from 12 votes
May 6, 2025
Jump to Recipe

Soft, fluffy and easy to make, these gluten free lemon cookies are a delicious and simple recipe. They’re perfectly sweet with just the right amount of tang, filled with poppy seeds and finished off with a simple lemon drizzle.

gluten free lemon cookies ripped in half to show texture

These lemon poppy seed cookies are everything cookies should be. Soft baked, melt in your mouth, lemony, sweet, tangy, fluffy, arguably the best cookies I’ve ever had.

When it comes time for dessert, I almost always reach for something vanilla, strawberry or lemon flavor. While I love my chocolate chip cookies, I’ll almost always choose vanilla or lemon (especially my gluten free lemon bars) over chocolate.

That may seem crazy to some of you who love chocolate, but as soon as you try this recipe, I think you’ll understand!

If you love this recipe and need more of a lemon fix, try my lemon raspberry cookies, gluten free lemon poppy seed cupcakes or gluten free lemon cake next!

ingredients in bowls

How to make gluten free lemon cookies

In a medium bowl, add the softened butter and sugar. If the butter was previously in the fridge, add to the microwave for about 20 seconds to soften before adding the sugar to the bowl.

You want the butter to be soft to the touch but not melted. If you have time, you can also just let the butter come to room temperature for about 30 minutes.

An odd trick but you can also put it behind your pants or in your bra if you’re worried about it getting too soft in the microwave!

Cream together the butter and sugar with an electric mixer. You want it to be nice and fluffy so beat for a good 30 seconds before adding any other ingredients.

Add in the egg, vanilla, lemon juice and lemon zest. I suggest zesting two lemons first and then using one for the juice. Beat together until creamy. 

Add in the flour, salt, baking powder and baking soda. Be sure to measure the flour using the spoon and level method, do not measure straight from the bag.

Two images showing how to make the cookie dough.

Beat just until a dough forms with an electric mixer. Careful not to over mix, once you don’t see any flour clumps, stop beating. Use a wooden spoon or rubber spatula to fold in the poppy seeds until evenly incorporated. 

Use a medium cookie scoop and to drop the dough in even circles onto a baking sheet lined with parchment paper. 

Bake for 10-12 minutes. 11 minutes is perfect in my oven, but all ovens are different. You want the bottoms/edges to be very slightly golden brown, but the center should be very soft and almost appear a bit raw in the cracks when you remove from the oven. 

Allow to cool for 5-10 minutes on the baking sheet and then transfer to a wire rack to finish cooling. The cookies will still be a bit delicate, so use a spatula to transfer them over.

Once completely cool, whisk together the powdered sugar and lemon juice until creamy. Drizzle over the cookies and sprinkle with extra poppy seeds if desired. 

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unbaked cookie dough in a glass bowl

Tips for a soft texture

There are a few essential things you want to keep in mind to ensure your cookies are not only chewy, but actually soft.

First, measure properly! One error I see a lot is inaccurately measured flour which causes cookies to get dry and overall unpleasant to eat. You want to spoon and level to measure, don’t scoop from the bag!

Also, you want to also measure the butter properly since this is is the key ingredients for the softness. You need 1 stick, so this is easy to do!

Second, remove the cookies from the oven before they actually look fully done. It’s really easy to over bake cookies, which will make them crunchy and definitely not fluffy and soft!

So, with this recipe, you want the edges to be slightly golden brown and the center still soft. They will continue to cook as they cool, so avoid the temptation to leave in the oven longer than 14 or minutes! Exact bake time will depend on your oven.

overhead shot of the gluten free lemon cookies with poppy seeds

How to store and freeze

Once prepared, these lemon poppy seed cookies will keep for about 5 days at room temperature. Allow them to cool completely, then store in an air tight container for best results.

You can also freeze these gluten free lemon cookies once baked! Again, let them cool completely, then transfer to a freezer safe bag and store for up to 2 months. Reheat in the oven at 300 until warm through the center.

Alternatively, you can freeze the cookie dough once it’s scooped into balls then bake from frozen. Just bake at 325 for a few extra minutes to account for the frozen dough.

one bite taken out of the gluten free lemon cookies to show texture

Tips for the best lemon flavor

You want to use fresh lemon juice and zest for this recipe. Not lemon extract or the lemon juice from the carton. The combination of juice + zest adds the best flavor! You can use a bit of extra lemon extract if you want even more flavor, but it’s totally not necessary.

But you definitely do not want to skimp on the lemon zest! I use one full tablespoon, sometimes more, to really get the most flavor. This will be about 2 full lemons, depending on size. The extra lemon glaze is optional, but I highly recommend it for the flavor it adds!

Can I make them vegan?

I have not personally tested these cookies without egg, but if you are going to make a substitution, I’d be inclined to use applesauce or a store bought egg replacer or apple sauce.

About 3-4 tablespoons of apple sauce will replace one large egg.

gluten free lemon poppy seed cookies ripped in half

Try these cookies next!

  • Vegan Chocolate Cookies
  • Oatmeal Chocolate Chip Cookies
  • Pumpkin Cookies
  • Paleo Chocolate Chunk Cookies

Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, tag me on instagram if you make this recipe so I can see your creation!

5 from 12 votes

Gluten Free Lemon Cookies

by: claire cary

Soft, fluffy and easy to make, these lemon poppy seed cookies are a delicious and simple recipe. They’re perfectly sweet with just the right amount of tang and finished off with a simple lemon drizzle.
/ /
Prep: 15 minutes mins
Cook: 12 minutes mins
Total: 27 minutes mins
12

Equipment

  • Electric Mixer
  • cookie scoop

Ingredients

Cookies

  • ½ cup unsalted butter
  • ¾ cup white sugar
  • 1 large egg
  • 1 teaspoon vanilla extract
  • 2 tablespoons lemon juice
  • 1 heaping tablespoon lemon zest
  • 1 ¾ cup + 2 tablespoons gluten free all purpose baking flour spoon & level to measure
  • ¾ teaspoon baking powder
  • ½ teaspoon baking soda
  • ¼ teaspoon salt
  • 1 tablespoon poppy seeds
  • optional: 1/2 teaspoon lemon extract

Lemon Glaze

  • ½ cup powdered sugar
  • 1 tablespoon lemon juice
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit. 
  • In a medium bowl, add the softened butter and sugar. If the butter was previously in the fridge, add to the microwave for about 20 seconds to soften before adding the sugar to the bowl. You want the butter to be soft to the touch but not melted. 
  • Cream together the butter and sugar with an electric mixer until smooth.
  • Add in the egg, vanilla, lemon juice and lemon zest. I suggest zesting two lemons first and then using one for the juice.
  • Beat together with the electric mixer until well combined. 
  • Add in the flour, salt, baking powder and baking soda. Be sure to measure the flour using the spoon and level method, do not measure straight from the bag.
  • Beat just until a dough forms. 
  • Use a wooden spoon to fold in the poppy seeds until evenly incorporated. 
  • Use a
    medium cookie scoop to drop the dough in even circles onto a baking sheet lined with parchment paper. Leave as is and don’t flatten to ensure the cookies are fluffy.
  • Bake for 10-12 minutes. 11 minutes is perfect in my oven, but all ovens are different. You want the bottoms/edges to be very slightly golden brown, but the center should be very soft and almost appear a bit raw in the cracks when you remove from the oven. Careful not to over bake as they will dry out easily!
  • Allow to cool for 10 minutes on the baking sheet and then transfer to a wire rack to finish cooling. 
  • Once completely cool, whisk together the powdered sugar and lemon juice until creamy. If it’s too thin, add a bit more sugar, too thick and add more lemon juice. Drizzle over the cookies and sprinkle with extra poppy seeds if desired. 

Notes

These cookies will spread a bit while baking, so you want to leave plenty of room between each cookie. I usually just put 6 on one baking sheet at a time. 
Do not skimp on the lemon zest! I use one full tablespoon, sometimes more, to really get the most flavor. This will be about 2 full lemons, depending on size.
I used the Bob’s Red Mill GF all purpose flour in the blue bag. You can try other GF all purpose flours (or just use regular AP flour) but make sure it has xanthan gum. If you are not GF, just sub for regular AP flour, it works both ways!
Serving: 1cookie / Calories: 190kcal / Carbohydrates: 26.1g / Protein: 2.6g / Fat: 8.6g / Fiber: 0.7g / Sugar: 11.4g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Oat Flour Lemon Raspberry Cookies
  2. Gluten Free Lemon Brownies
  3. Vegan Lemon Blueberry Cookies
  4. Gluten Free Lemon Bars
5 from 12 votes (1 rating without comment)

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Comments

  1. Diana Adams
    August 20, 2025

    I just made this recipe – the dough was very stiff. I scooped it onto the baking tray.
    Baked them 11 minutes- the dough did not spread – they were just a round mound like from the cookie scoop.
    Did I do something wrong?

    Reply
    1. Claire Cary
      August 21, 2025

      What flour did you use and how did you measure it?

      Reply
  2. Brooke
    June 16, 2025

    These are AMAZING!! I just made these and my husband and I are huge fans. The lemon flavor is incredible, I had to use coconut sugar but it still turned out tasty and flavorful 🙂 My husband has already requested I make these again ASAP LoL Thank you so much for sharing!5 stars

    Reply
    1. Claire Cary
      June 16, 2025

      Love it! Thank you, Brooke!

      Reply
  3. Jennifer
    May 8, 2025

    Delicious! I followed the recipe exactly, except that I made them smaller and yielded about 20. Baked for 10 minutes. So tasty! Thank you!5 stars

    Reply
    1. Claire Cary
      May 9, 2025

      Thank you, Jennifer!

      Reply
  4. Phyllis
    June 30, 2023

    Lemon poppy seed cookies.

    is this 1 3/4 cups flour ? or 1 – 3/4 Tablespoons or teaspoons ???
    ▢ 1 ¾ + 2 tablespoons gluten free all purpose baking flour spoon & level to measure

    Reply
    1. Claire Cary
      July 2, 2023

      It’s 1 3/4 cup PLUS 2 tablespoons!

      Reply
  5. Leslie
    June 20, 2023

    I level only been gluten-free for about 6 months, but I have yet to find a baked good that I like. These cookies make the grade! I added a little extra zest in the glaze but that was my only modification. Thank you so much for sharing these. My kids can’t even tell they’re “special.”5 stars

    Reply
    1. Claire Cary
      June 21, 2023

      Makes me so so happy to hear! Thank you, Leslie!

      Reply
  6. Gwen006
    July 28, 2022

    These cookies are so good! For the record I used Bob’s Red Mill egg replacer and swapped out half the sugar with monkfruit sweetener. The cookies turned out great! Can’t wait to try some of your other recipes.5 stars

    Reply
    1. Claire Cary
      August 8, 2022

      Amazing! Happy to know those subs worked out!

      Reply
    2. Lisa
      March 14, 2025

      Thank you for sharing that you used Bob Red Mill’s egg replacer and that it turned out!

      @ClaireCary when you say BRM’s blue bag of GF flour do you mean the 1:1 GF baking flour vs BRM’s AP GF flour? The recipe states AP GF flour, but your notes said blue…and I remember the 1:1 being blue and their AP being red. Thanks!

      Reply
      1. Claire Cary
        March 17, 2025

        The 1:1 baking flour is the blue one!

        Reply
  7. Talaya
    May 14, 2022

    Great recipe! I made this for my teen daughter who is newly gluten free. She loved it! Thank you so much. Just a tip for other bakers, the dough looks very soft, almost too soft for a cookie, but trust it, it will not spread too much. 😀5 stars

    Reply
  8. Lucky
    December 7, 2021

    Do you think I could make these into thumbprint cookies? Was thinking of putting a lemon preserve (or something along those lines) in the middle5 stars

    Reply
    1. Claire Cary
      December 7, 2021

      Love that idea! That should work, but I would make the intents as soon as they come out of the oven rather than before since they will spread while baking. Might also help to chill the dough for about 30 minutes. Let me know how they turn out!

      Reply
  9. Nicole
    March 8, 2021

    Very good!! Nice and soft.5 stars

    Reply
  10. Kayte
    March 7, 2021

    I made these but instead of lemons I used fresh yuzu juice! They turned out absolutely delicious!
    Thank you for this fabulous recipe!5 stars

    Reply
    1. Claire Cary
      March 8, 2021

      omg I have to try that, sounds so good!

      Reply
  11. Jocelyne Guay
    December 22, 2020

    Hi,

    Can I prepare the recipe a couple of days before cooking them? Keeping them in the fridge or in the freezer?

    Thank you!

    Reply
    1. Claire Cary
      December 22, 2020

      You can keep them in the fridge or freezer, but let them come to room temperature before baking!

      Reply
      1. Jocelyne Guay
        December 24, 2020

        Thank you! 🙂

        Reply
  12. sarah
    November 29, 2020

    can i replace the granulated sugar with coconut sugar or any healthy sweetener ?

    Reply
    1. Claire Cary
      November 29, 2020

      You can use coconut sugar! The cookies will be much darker though.

      Reply
      1. Aimee
        January 12, 2023

        If I want to use honey or maple syrup, will that make it too liquidy? Any way to compensate for that?5 stars

        Reply
        1. Claire Cary
          January 12, 2023

          I don’t recommend that, I would definitely stick with the recipe as written! You can try this lemon cookie recipe which uses maple syrup.

          Reply
  13. Sarah Bonnot
    April 27, 2020

    Surprised my mom (a lemon lover) with these and they did not disappoint! These taste like the top of a muffin and lemon poppy seed bread had a baby. Highly recommend using fresh lemon juice and zest !5 stars

    Reply
    1. Claire Cary
      April 28, 2020

      Thanks Sarah! Definitely agree with that analogy! So happy you enjoyed them 🙂

      Reply
  14. Kelly
    April 19, 2020

    These turned out great and so yummy!! Just the perfect amount of sweet and tart. I used regular AP flour because I’m not GF and I made only a small amount of lemon glaze (maybe 1/4) which was plenty for a little bit on each cookie.5 stars

    Reply
    1. Claire Cary
      April 19, 2020

      Yay! So happy you enjoyed them. Thanks for the feedback Kelly!

      Reply
claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


Read Claire’s Story

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