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Meal Type » Gluten Free Breakfast » Best Gluten Free Bagels

Best Gluten Free Bagels

Claire Cary

By

Claire Cary

5 from 15 votes
Updated: October 27, 2026
Jump to Recipe

These fresh homemade gluten free bagels are the real deal! With a perfectly baked crust, a chewy and airy center, this dairy free recipe is freezer friendly and surprisingly healthy and easy to make!

gluten free everything bagels on parchment paper

This gluten free bagel recipe was not easy to develop, but ohmygosh it was worth it. You’ll never go back to store bought gluten free bagels again. I feel the same about my gluten free bread!

I do love the gluten free bagels from Trader Joe’s and there’s so many other brands on the market these days, but honestly, making them from scratch is truly so much better.

These bagels have a delicious and classic flavor, and are perfect with my homemade vegan cream cheese on top, with peanut butter, or made into a breakfast or regular sandwich with all of your favorites. Anything goes! If you love this recipe, try my gluten free scones or gluten free soft pretzels next!

Tips before we cook!

  • I tested both 60 and 90 minute options for letting the dough rise and both turned out really well, but I preferred the texture with the 90 minute proof. If you let bagels rise for too long they can dry out and get gummy, especially gluten free bagels, so I don’t recommend more than 2 hours.
  • To make these bagels without a stand mixer, simply whisk together all dry ingredients, then mix in the wet until a dough forms. Add to a floured surface and with floured hands, knead the dough for 5 minutes. Transfer back to the bowl and follow the rest of the recipe as usual.
ingredients for the recipe in bowls

Ingredient tips & swaps

Flour. This original recipe called for the Bob’s Red Mill 1:1 Baking Flour, but I came across their bread flour when testing my gluten free cinnamon rolls and fell in love with it. I had to re-rest this recipe with that flour and they turned out even better than the original. I do not recommend swapping out the bread flour for a regular gluten free all purpose as the blend are very different!

Yeast. Be sure you’re using instant yeast here! The bread flour comes with a packet of active dry yeast, which you do not want to use. Instant yeast means you don’t have to let it bloom before adding to the dough.

Eggs. Like I mentioned, the eggs are a really key ingredient here! They bind all ingredients together and give the bagels a nice rise and fluffy texture. The protein from the egg whites allows the bagels to rise more and creates small air pockets which contribute to the overall texture of the final recipe.

Sugar. A bit of sugar in the dough will feed the yeast and help the dough rise! Do not omit this.

Olive oil. This will soften the crumb and add a nice flavor. I recommend sticking with olive oil for the best result!

two images showing how to make the dough

How to make gluten free bagels

To the bowl of a stand mixer with the dough hook, combine the flour, sugar, yeast, baking powder and salt. Warm the water in your microwave to about 110 degrees Fahrenheit. It should feel like warm bath water.

Add in the water, olive oil, eggs and vinegar and mix using the dough hook on medium/low speed for about 5 minutes, scraping down the sides and bottom of the bowl as needed.

If the dough seems at all dry, add in 1-2 more tablespoons of water. Once the dough has kneaded, cover and let rise for 30 minutes.

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Divide the dough into 6 equal segments. Roll each piece into a ball, then use your finger to poke a hole through the center. It helps to flour your hands to prevent any sticking.

Add to a baking tray lined with parchment paper, brush the tops with olive oil and place in a cool dark place. I like to use the drawer under my oven, but the actual oven works well too.

Making the gluten free bagels.

Let rise for 60 minutes. They won’t double in size, but should puff up. During the final 15 minutes or so, preheat the oven to 400 degrees Fahrenheit, of course removing the bagels from the oven if they were in there.

Bring 8 cups of water to a boil with the honey and baking soda. Once it reaches a rapid boil, add the bagels 1-2 at a time and boil on each side for 30 seconds. Use a slotted spoon to remove from the water and place back on the baking sheet.

Sprinkle with sesame seeds, everything bagel seasoning, poppy seeds or just a pinch of salt if desired. Once all bagels have boiled and been seasoned, bake for 20 minutes, turn the oven off and let sit for 5-10 more minutes. The tops should be golden brown.

Remove from the oven and let cool for at least 30 minutes before slicing. The structure needs time to set, so avoid cutting too early! Toast if desired, serve with your favorite spread and enjoy! Try my gluten free bagel bites next!

bagels before baking with seasoning on top

How to store and freeze

These gluten free bagels are definitely best if eaten or frozen within 24 hours, but will keep for about 3 days at room temperature. If you’re eating them a few days after they’ve cooked, I suggest toasting them for the best texture.

To freeze, my suggestion is to let them cool completely, slice in half and freeze in a freezer safe zip lock bag. When you’re ready to eat them, just pop in the toaster (no need to defrost beforehand) and cook until warm and toasty.

gluten free bagel ripped in half to show the texture

Expert tips

Make them a different size! You can make these bagels as big or as small as you like. Instead of 6 larger bagels you can make 8-10 smaller bagels. Just keep in mind the bake time will be shorter if you make the bagels smaller.

Don’t skip the boiling! Boiling the bagels gelatinizes the starch and creates a shiny crispy exterior. It also sets the shape and gives a chewy interior texture.

gluten free bagels recipe with cream cheese

More breakfast recipes you’ll love!

  • Gluten Free Blueberry Muffins
  • Banana Bread
  • Gluten Free Donuts
  • How to Make Oatmeal
  • Gluten Free Pancakes

Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, if you make this recipe, be sure to tag me on instagram and leave a comment below so I can see your creation!

5 from 15 votes

Gluten Free Bagels

by: claire cary

These gluten free bagels are the real deal! With a perfectly baked crust, a chewy and airy center, this dairy free recipe is freezer friendly and surprisingly easy to make!
/ /
Prep: 15 minutes mins
Cook: 25 minutes mins
Rise Time 1 hour hr 30 minutes mins
Total: 2 hours hrs 10 minutes mins
6

Ingredients

Bagels:

  • 1 16 ounce bag Bob’s Red Mill gluten free bread flour
  • 1 packet instant yeast
  • 1 tablespoon sugar
  • 1 teaspoon salt
  • 1 ½ teaspoons baking powder
  • 1 cup warm water
  • 2 tablespoons olive oil
  • 2 eggs
  • 1 teaspoon apple cider vinegar

Water:

  • 8 cups water
  • 2 tablespoons honey
  • 2 teaspoons baking soda
US Customary – Metric

Instructions

  • To the bowl of a stand mixer with the dough hook, combine the flour, sugar, yeast, baking powder and salt.
  • Warm the water in your microwave to about 110 degrees Fahrenheit. It should feel like warm bath water.
  • Add in the water, olive oil, eggs and vinegar and mix using the dough hook on medium/low speed for about 5 minutes, scraping down the sides and bottom of the bowl as needed.
  • If the dough seems at all dry, add in 1-2 more tablespoons of water.
  • Once the dough has kneaded, cover and let rise for 30 minutes.
  • Divide the dough into 6 equal segments.
  • Roll each piece into a ball, then use your finger to poke a hole through the center. It helps to flour your hands to prevent any sticking.
  • Add to a baking tray lined with parchment paper, brush the tops with olive oil and place in a cool dark place. I like to use the drawer under my oven, but the actual oven works well too.
  • Let rise for 60 minutes. They won’t double in size, but should puff up.
  • During the final 15 minutes or so, preheat the oven to 400 degrees Fahrenheit, of course removing the bagels from the oven if they were in there.
  • Bring 8 cups of water to a boil with the honey and baking soda.
  • Once it reaches a rapid boil, add the bagels 1-2 at a time and boil on each side for 30 seconds. Use a slotted spoon to remove from the water and place back on the baking sheet.
  • Sprinkle with sesame seeds, everything bagel seasoning, poppy seeds or just a pinch of salt if desired.
  • Once all bagels have boiled and been seasoned, bake for 20 minutes, turn the oven off and let sit for 5-10 more minutes. The tops should be golden brown.
  • Remove from the oven and let cool for at least 30 minutes before slicing. The structure needs time to set, so avoid cutting too early! Toast if desired, serve with your favorite spread and enjoy!

Notes

These bagels are definitely best if eaten or frozen within 24 hours, but will keep for about 3 days at room temperature. If you’re eating them a few days after they’ve cooked, I suggest toasting them for the best texture. They will keep in the freezer for up to 1 month.
Serving: 1bagel / Calories: 354kcal / Carbohydrates: 62g / Protein: 12g / Fat: 17g / Fiber: 11g / Sugar: 8g

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5 from 15 votes (6 ratings without comment)

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Comments

  1. Sarah
    August 31, 2026

    I’m confused though because you mention that it has to be Bobs bread flour but when I search for that, Bobs Red Mill doesn’t have a bread flour. There is a bread mix. Or an AP flour. Are you having their bread mix?

    Reply
    1. Claire Cary
      August 31, 2026

      It’s called mix! You just don’t use the yeast packet in there, just the flour. I link it in the recipe card.

      Reply
  2. Becca
    April 26, 2026

    Actually life changing! So good, and very easy to make. Mine were a little dense and I found the dough needed a bit more water in the beginning, but I can mess with the recipe a bit in future runs to get it perfect. Thank you so much for this!5 stars

    Reply
    1. Claire Cary
      April 28, 2026

      So glad you made it work for you! Thanks, Becca!

      Reply
  3. Bethany Brown
    January 3, 2026

    I tried making these today and it turned into soup. 8 cups of water… I followed it to a tee. What did I do wrong? It’s not forming into a dough.

    Reply
    1. Claire Cary
      January 3, 2026

      The 8 cups of water is to boil the bagels! This does not get added to a dough!

      Reply
  4. Mallory
    December 28, 2025

    These were amazing!! I actually forgot the sugar, but they turned out beautifully.5 stars

    Reply
  5. Margot
    December 16, 2025

    May I use Bob’s Red Mill All Purpose GF flour without xanthan gum for this recipe?

    Reply
    1. Claire Cary
      December 17, 2025

      No, you need the bread flour for this recipe!

      Reply
  6. Jen
    July 3, 2025

    I don’t tolerate honey. Should I replace with maple syrup? Or can I use granulated sugar for the boil?

    Reply
    1. Claire Cary
      July 3, 2025

      I’d use granulated sugar!

      Reply
  7. Debbie
    June 18, 2025

    Something went wrong with my dough but I pivoted and made a sort of biscuit! Anyway, flavor and texture is all there!!! Have you created a bread recipe from this? Would love that! Thanks!!

    Reply
    1. Claire Cary
      June 18, 2025

      Oh great idea! What do you feel like went wrong with the dough? I haven’t created bread from this but I do have a gluten free bread recipe coming soon – stay tuned!

      Reply
  8. Edwina
    May 8, 2025

    Before I try these (and I am excited because all your recipes so far are perfect), may I use Bob’s 1:1? You mention that you used it, but how much would use?

    Reply
    1. Claire Cary
      May 8, 2025

      No, for this updated recipe you want the gluten free bread flour!

      Reply
«Older Comments
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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