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Meal Type ยป Gluten Free Breakfast ยป Gluten Free Everything Bagel Bites

Gluten Free Everything Bagel Bites

Claire Cary

By

Claire Cary

5 from 1 vote
April 23, 2025
Jump to Recipe

These gluten free bagel bites are the perfect bite sized snack recipe! They’re made with just a few simple ingredients, have 9 grams of protein per serving and are so easy to make.

gluten free everything bagel bites with cream cheese spread on top

If you’re on TikTok, you’ve probably seen the two ingredient bagel bites basically all over the place. So obviously I had to make a gluten free version!

They have a delicious crispy outer crust, soft and fluffy center and are perfect as is or with cream cheese on top. Plus, they take just 15 minutes to prep! If you love this recipe, try my gluten free focaccia or fan favorite gluten free banana bread next.

Before we get started…

  • I used the Bob’s Red Mill gluten free bread mix/flour here, but I have also tested these with just regular gluten free all purpose baking flour and both work well!
  • If you aren’t into everything bagel seasoning, you can leave these plain, use sesame seeds, poppy seeds etc.
ingredients in bowls with labels

How to make air fryer bagel bites

In a mixing bowl, combine the flour (making sure to spoon and level to measure) , brown sugar, yeast, baking powder and salt. Whisk to combine.

Add in the greek yogurt and mix with a rubber spatula, then use your hands to fully combine. It helps to lightly grease your hands as it get sticky!

dry ingredients in a bowl

Preheat your air fryer to 350 Fahrenheit. Roll the dough into 8 even sized balls.

Brush a bit of melted butter on top, then roll in the everything bagel seasoning. You can also use poppy seeds, sesame seeds or leave them plain with a bit of butter and salt.

bagel dough in a bowl

Add to your preheated air fryer and air fry for 10-12 minutes.

Remove and let cool for about 15-20 minutes. Cooling is important here as it helps the texture set. Enjoy as is or serve with cream cheese, butter, jam etc! Try my homemade gluten free bread or gluten free pretzel bites next!

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dough rolled in a ball

Key ingredients and swaps

Flour. I used the Bob’s Red Mill gluten free bread flour which I also use my gluten free bagels and gluten free cinnamon rolls. You can use regular gluten free all purpose baking flour here instead – both work well! Almond flour, oat flour or coconut flour will NOT work here! You must use either a bread flour or gluten free baking flour.

Greek Yogurt. There unfortunately is no good sub as greek yogurt is kind of the star of the show here! Because we are removing the gluten (which is the protein found in wheat, barely and rye), we need a different protein source to help give these bagel bites a nice texture.I suggest plain, full fat greek yogurt for best results.

Yeast. A little bit of instant yeast will help fluff up these bagel bites and also help give them a more classic bagel flavor.

Sugar. Just a touch of brown sugar will sweeten the bites and also act as food for the yeast so it activates properly.

Baking powder. Because we aren’t letting the dough rise, the yeast will only do so much so the extra baking powder is key for a fluffy texture!

gluten free everything bagel bites on parchment paper

Stuff with cream cheese!

I opted to keep these unstuffed, but a delicious option is to add about a teaspoon of cream cheese (from a block not a tub) to the center of the dough and roll it around that.

That way when you bite into it, the cream cheese is already there! I also love adding in chopped chives to the dough for extra flavor.

How to store

These gluten free everything bagel bites are definitely best served fresh and can get a bit dry if left out for too long. What I like to do is let them cool, store in an air tight container, then air fry for just a couple minutes to get them warm in the center and fluffed up a bit!

You can also freeze these! They arguably do better with freezing than sitting at room temperature. Just let them cool completely, transfer to a freezer safe bag and freeze for up to 1 month. Reheat in the air fryer until warm through the center.

gluten free everything bagel bite ripped in half to show texture

More gluten free breakfast recipes!

  • Gluten Free Blueberry Muffins
  • Almond Flour Waffles
  • Vegan Baked Oatmeal
  • Gluten Free Quiche
  • Quinoa Breakfast Bowl

Follow along on on instagram and subscribe to my email list for more recipes and updates. Leave a comment and rating below if you try this recipe and let us know how it turns out!

5 from 1 vote

Gluten Free Everything Bagel Bites

by: claire cary

These gluten free bagel bites are the perfect bite sized snack recipe! They’re made with just a few simple ingredients, have 9 grams of protein per serving and are so easy to make.
/ /
Prep: 15 minutes mins
Cook: 10 minutes mins
Total: 25 minutes mins
4

Equipment

  • Air Fryer

Ingredients

  • 1 cup gluten free bread flour see notes
  • 1 cup full fat greek yogurt
  • 1 teaspoon brown sugar
  • 1 teaspoon instant yeast
  • 1 teaspoon baking powder
  • ¾ teaspoon salt
  • 4 tablespoons everything bagel seasoning
  • 1-2 tablespoons butter melted
US Customary – Metric

Instructions

  • In a mixing bowl, combine the flour (making sure to spoon and level to measure) , brown sugar, yeast, baking powder and salt. Whisk to combine.
  • Add in the greek yogurt and mix with a rubber spatula, then use your hands to fully combine. It helps to lightly grease your hands as it get sticky!
  • Preheat your air fryer to 350 Fahrenheit.
  • Roll the dough into 8 even sized balls.
  • Brush a bit of melted butter on top, then roll in the everything bagel seasoning. You can also use poppy seeds, sesame seeds or leave them plain with a bit of butter and salt.
  • Add to your preheated air fryer and air fry for 10-12 minutes.
  • Remove and let cool for about 15-20 minutes. Cooling is important here as it helps the texture set.
  • Enjoy as is or serve with cream cheese, butter, jam etc!

Notes

I used the Bob’s Red Mill gluten free bread mix/flour here, but I have also tested these with just regular gluten free all purpose baking flour and both work well!
Almond flour, oat flour or coconut flour will NOT work here! You must use either a bread flour or gluten free baking flour.
There unfortunately is no good sub as greek yogurt is kind of the star of the show here! Because we are removing the gluten (which is the protein found in wheat, barely and rye), we need a different protein source to help give these bagel bites a nice texture.
 
Serving: 2bagel bites / Calories: 145kcal / Carbohydrates: 26g / Protein: 9g / Fat: 3g / Saturated Fat: 0.1g / Sodium: 900mg / Fiber: 4g / Sugar: 4g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Strawberry Banana Protein Shake
  2. Peanut Butter Protein Granola
  3. Protein Acai Bowl
  4. Oat Flour Pumpkin Bread
5 from 1 vote

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Recipe Rating




Comments

  1. Andrea
    December 11, 2025

    OMG these are amazing!!! Itโ€™s the first time gluten free bread tastes like real bread. It was quick and so easy to make.5 stars

    Reply
    1. Claire Cary
      December 15, 2025

      Love to hear that! Thanks, Andrea!

      Reply
  2. Ellie
    May 2, 2025

    These look so yummy!! I donโ€™t have an air fryer thoughโ€ฆ do you know if a regular oven would work?

    Reply
    1. Claire Cary
      May 5, 2025

      It should! I would place a wire rack on a baking sheet so they cook more evenly. I’d try 400 for about 20-25 minutes.

      Reply
      1. Trisha
        May 21, 2025

        Should I boil them in water 1st?

        Reply
        1. Claire Cary
          May 22, 2025

          No you don’t need to do that with this recipe!

          Reply
  3. Katie
    April 29, 2025

    Hi Claire,
    Love your website. I use your recipes all the time.
    Do you know if this recipe is possible with a dairy free Greek yogurt?

    Reply
    1. Claire Cary
      April 30, 2025

      It should work! I’d use the Kite Hill Greek style yogurt. The only thing is that it’s a bit more wet than standard greek yogurt so you may need a smidge more flour. let me know if you try it!

      Reply
claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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