Subscribe for our FREE 30 minute meals book!

  • Recipes
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
  • Dessert
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
  • Diet
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
  • About
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop

Meal Type ยป Gluten Free Snacks ยป Gluten Free Carrot Cake Muffins

Gluten Free Carrot Cake Muffins

Claire Cary

By

Claire Cary

5 from 43 votes
February 21, 2024
Jump to Recipe

Need a little pick me up?! These gluten free carrot cake muffins are moist, fluffy, and topped with a cinnamon streusel topping and maple cream cheese glaze. Made in just one bowl, healthy, and bursting with fresh carrot cake flavor.

two gluten free carrot cake muffins stacked on each other

Muffins are forever one of my favorite snacks because they’re basically like cupcakes, but it’s socially acceptable to eat them at any time of day. They’re an easy on the go breakfast, satisfying snack and are just sweet enough to pass as dessert.

These carrot cake muffins feature freshly grated carrots (which is super easy to do if you have a food processor), a mix of almond flour and gluten free all purpose flour, brown sugar and maple syrup for moisture and flavor, eggs, milk, oil and a whole lot of spices!

They’re topped with a four ingredient cinnamon streusel and finished off with a dairy free cream cheese glaze. Same flavor profile as my gluten free carrot cake cookies!

They truly couldn’t be more easy or delicious. I may or may not have eaten four in one day so I think that really speaks to how good they are, yeah?! You have the option to add chopped nuts, but apparently some people even like pineapple in carrot cake?! That’s a whole new world to me! If you love this recipe, try my almond flour banana muffins or carrot cake banana bread next!

ingredients in bowls with labels

How to make carrot cake muffins

Add the peeled carrots to a food processor and process until broken up and completely shredded. 

In a large mixing bowl, whisk together all wet ingredients until combined. Add in the dry ingredients aside from the nuts and carrots and mix well. 

Fold in the chopped walnuts and carrots until everything is well incorporated. The batter should be pretty thick at this point. Use a medium cookie scoop and add the batter to a lined cupcake/muffin tray. Fill about 3/4 of the way up.

two images showing how to make the batter

To make the streusel topping, add the softened butter, flour, sugar and cinnamon to a small bowl. Use a fork, your hands or a pastry cutter to combine the ingredients. It should be crumbly and on the drier side. If it seems too wet, add in a bit more flour. 

Use your fingers to crumble the streusel on top of the muffins. Add more than you think you should, the streusel will separate as the muffins bake. 

Bake at 425 for 2 minutes, then lower the temperature to 350 and bake for 16-20 more minutes. Careful not to over-bake, you don’t want them to become dry. Test them at 16 minutes, a toothpick should come out clean. 

Remove from the oven, let cool as is for 10 minutes, then remove the muffins from the tray and let finish cooling on a cooling rack. Once cool, whisk together the cream cheese and maple syrup and drizzle on top of the muffins. Try my gluten free carrot cake cupcakes next!

Overhead image of the muffins with streusel topping before going in the oven.

The key to a moist texture

Just because these healthy carrot cake muffins are gluten free doesn’t mean they have to be dry and bland, because I promise they aren’t!

The main ingredients in this recipe that keep the muffins moist are the oil, maple syrup, apple sauce, and non-dairy milk. I haven’t tested this recipe with any replacements, so I recommend sticking to those ingredients in the listed proportions for best results.

The other key is the amount of flour used and the bake time! Too much flour can yield muffins (and other baked goods) that are too dry and crumbly.

WANT TO SAVE THIS RECIPE?

Enter your email below & we’ll send it straight to your inbox. Plus you’ll get great new recipes from us every week!

However, the almond flour works to both keep the muffins moist and add structure, which is why we use it in addition to the gluten free all purpose flour.

Another thing to keep in mind is that the muffins will continue cooking even after you take them out of the oven.

The muffin tin will still be hot which can dry out the muffins if they’re left in for too long. My suggestion? Remove them and place on a cooling rack after about 10 minutes.

gluten free carrot cake muffins with the wrapper pulled off

Do you need to add xanthan gum to gluten free muffins?

Even though these muffins are gluten free, you don’t need to add any extra xanthan gum to the recipe.

I recommend sticking with the Bob’s Red Mill GF 1:1 Baking Flour, but if you use a different one just make sure it has xanthan gum in the mix. If you aren’t gluten free, just regular AP flour will work!

How to store

Once prepared, these muffins will store at room temperature for 3-5 days. Because of the apple sauce, they do need a little bit of air to breathe, so I recommend storing them in a tupperware container with the lid slightly ajar for best results.

carrot cake muffins stacked on a wire rack

Ingredient swaps

EGGS. You can sub the eggs for a vegan alternative, and flavor-wise they will be great, but the texture will be much more dense and the muffins won’t rise as much. I’d suggest either flax eggs or a store bought egg replacer like Bob’s Red Mill.

SUGAR. In most recipes you can use honey and maple syrup interchangeably, but I do not recommend using honey in these carrot cake muffins.

The maple syrup adds a bit more moisture than the honey and makes the final muffins a bit fluffier. If that’s all you have, you can get away with it, but keep in mind the batter will be a bit thicker and I suggest baking for 1-2 minutes less than recommended.

CARROTS. You can swap the fresh carrots for store bought grated carrots, but the texture and flavor is much better with fresh carrots, so I recommend this method. It’s super easy if you just use a food processor or a grater.

FLOUR. If you want to make these nut free, you can swap the 1 cup of almond flour for an additional 1/2 cup of gluten free all purpose flour. If you are not gluten free, simply swap the GF all purpose for regular all purpose flour.

gluten free carrot cake muffins with a bite taken out on parchment paper

Still hungry? Try these snacks next!

  • Gluten Free Blueberry Muffins
  • Gluten Free Banana Muffins
  • Blueberry Banana Bread
  • Gluten Free Banana Bread
  • Mini Chocolate Chip Muffins

Follow along on on instagram and subscribe to my email list for more recipes and updates. Leave a comment and rating below if you try this recipe and let us know how it turns out!

5 from 43 votes

Gluten Free Carrot Cake Muffins

by: claire cary

Need a little pick me up?! These carrot cake muffins are moist, fluffy, and topped with a cinnamon streusel topping and maple cream cheese glaze. Made in just one bowl, gluten free, and bursting with fresh carrot cake flavor.
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
12

Ingredients

Wet

  • ½ cup light brown sugar
  • ¼ cup maple syrup
  • ⅓ cup oil avocado, vegetable etc.
  • ¼ cup milk dairy or nondairy
  • 2 large eggs
  • 1 teaspoon vinegar I used apple cider
  • ⅓ cup apple sauce
  • 1 teaspoon vanilla

Dry:

  • 1 ½ cup gluten free all purpose baking flour
  • 1 cup blanched almond flour see notes for subs
  • 1 ½ teaspoon baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon cinnamon
  • ½ teaspoon ginger
  • ½ teaspoon nutmeg
  • ¼ teaspoon cloves
  • ½ teaspoon salt
  • 1 ¼ cup fresh grated carrots about 2 large carrots
  • ½ cup finely chopped walnuts optional

Streusel:

  • 3 tablespoons gluten free all purpose baking flour
  • 3 tablespoons brown sugar
  • ½ teaspoon cinnamon
  • 1 ½ tablespoons softened butter or refined coconut oil

Cream Cheese Glaze:

  • 4 tablespoons plain cream cheese I used Kite Hill dairy free
  • 2-3 tablespoons maple syrup
US Customary – Metric

Instructions

  • Preheat the oven to 425 degrees Fahrenehit. 
  • Add the peeled and chopped carrots to a food processor and process until broken up and completely shredded. 
  • In a large mixing bowl, whisk together all wet ingredients until combined. 
  • Add in the dry ingredients aside from the nuts and carrots and mix well with a wooden spoon. Be sure to spoon and level the flour, don’t scoop right from the bag.
  • Fold in the chopped walnuts and carrots until everything is well incorporated. The batter should be pretty thick at this point, but that is key to a muffin with a nice round top!
  • Use a spoon or cookie scoop and add the batter to a lined cupcake/muffin tray. Fill about 3/4 of the way up.
  • To make the streusel topping, add the softened butter, flour, sugar and cinnamon to a small bowl.
  • Use a fork, your hands or a pastry cutter to combine the ingredients. It should be crumbly and on the drier side. If it seems too wet, add in a bit more flour. 
  • Use your fingers to crumble the streusel on top of the muffins. Add more than you think you should, the streusel will separate as the muffins bake. 
  • Bake at 425 for 2 minutes, then lower the temperature to 350 and bake for 16-20 more minutes. 
  • Careful not to over-bake, you don’t want them to become dry. Test them at 16 minutes, a toothpick should come out clean, but add about 2 more minutes at a time as needed. 15 is usually perfect in my oven!
  • Remove from the oven, let cool as is for 10 minutes, then remove the muffins from the tray and let finish cooling on a cooling rack. 
  • Once cool, whisk together the cream cheese and maple syrup and drizzle on top of the muffins.

Notes

You can use pre-shredded carrots from a bag if you prefer, but the texture and flavor is much better with fresh carrots, so I recommend this method.
You can sub the almond flour for oat flour, but cut back on the bake time by just 1-2 minutes since oat flour is more absorbent than almond.
You can sub the eggs for a vegan alternative, and flavor-wise they will be great, but the texture will be much more dense and the muffins won’t rise as much. I’d suggest either flax eggs or a store bought egg replacer like Bob’s Red Mill.
Serving: 1muffin / Calories: 276kcal / Carbohydrates: 37g / Protein: 5.1g / Fat: 12.3g / Fiber: 2g / Sugar: 16.4g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Vegan Gluten Free Banana Bread
  2. Almond Flour Banana Muffins
  3. Protein Banana Bread
  4. Strawberry Protein Energy Bites
5 from 43 votes (11 ratings without comment)

leave a comment and rating Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Comments

  1. Mimsie
    April 7, 2026

    Have you ever made these into mini muffins? I’d like to make some for an upcoming brunch. Any suggestions for oven temperature and length of baking time? Thanks.

    Reply
    1. Claire Cary
      April 8, 2026

      No but that will work! Same temperature but start with about 11 minutes and adjust from there.

      Reply
      1. Mim
        April 8, 2026

        Thanks for the answer about mini muffins….I’m making some today.

        Reply
  2. Amy
    March 6, 2026

    Hello! Do you have any experience freezing these?? And if so, any suggestions?!

    Reply
    1. Claire Cary
      March 9, 2026

      Should be fine to freeze! Let them cool completely, then place in a freezer safe bag for up to 2 months. Let thaw and then warm up before enjoying.

      Reply
  3. kara
    February 14, 2026

    Question on the flours . Cannot do oat or almond, would King Arthur gluten free flour and adding walnuts work? Food sensitivites regarding post op .Thanks!

    Reply
    1. Claire Cary
      February 17, 2026

      Should be ok, I’d suggest 2 cups of King arthur instead of the oat and almond!

      Reply
  4. Wendy Lea
    February 1, 2026

    GREAT RESULTS with this recipe! My grandsons gave it a 5 star review also. The combo of the two flours makes a great texture, not grainy like only almond flour recipes.
    Will be making these again for sure!5 stars

    Reply
  5. Khushee
    January 29, 2026

    LOVE this recipe!5 stars

    Reply
  6. LeeAnn
    December 30, 2025

    My husband LOVED these. He enjoys raisins in carrot cake. Can I add them? If so, how much should I add and what other adjustments would I need to make?5 stars

    Reply
    1. Claire Cary
      January 2, 2026

      Yes! I would add about 1/2 cup but no other changes are needed.

      Reply
  7. Arlene
    August 27, 2025

    Can I make this in a loaf pan instead of muffins for easier transport? If so, what changes would you recommend? Thanks!

    Reply
    1. Claire Cary
      August 28, 2025

      Yes! No changes- just bake for about 55-60 minutes or until a toothpick comes out clean. If you notice the top browning too early, just tent the top with foil.

      Reply
  8. Abbie
    August 24, 2025

    Thanks Claire for this solid muffin recipe. I was a bit unsure of the ACV, but it does make them lighter with no taste of vinegar that I could detect. I left off the streusel and opted to make a maple cream cheese frosting. Definitely adding to my favorite muffin recipes.5 stars

    Reply
    1. Claire Cary
      August 25, 2025

      Delish! So glad you made them work for you!

      Reply
ยซOlder Comments
1 2 3
claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


Read Claire’s Story

you’ll also love

  • Gluten Free Snack Recipes

    Vegan Gluten Free Banana Bread

  • Gluten Free Snack Recipes

    Almond Flour Banana Muffins

  • Refined Sugar Free Recipes

    Protein Banana Bread

  • Gluten Free Snack Recipes

    Strawberry Protein Energy Bites

  • Gluten Free Desserts

    Pineapple Mango Popsicles

  • Gluten Free Desserts

    Vegan Lemon Blueberry Cookies

claire cary of eat with clarity

get more clarity

"โœฆ" indicates required fields


More

  • About
  • eBook
  • Disclaimer
  • Privacy
  • Services

Recipes

  • Recipe Index
  • Breakfast
  • Desserts
  • Dinner
  • Drinks

As Seen In

  • Buzzfeed
  • Yahoo!
  • Well + Good
  • Parade
  • Self

Site by Katelyn Gambler & Made To Thrive

COPYRIGHT ยฉ 2021 ยท EAT WITH CLARITY, LLC. ALL RIGHTS RESERVED.

Information from your device can be used to personalize your ad experience.

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.