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Meal Type » Gluten Free Snacks » Gluten Free Carrot Cake Muffins

Gluten Free Carrot Cake Muffins

Claire Cary

By

Claire Cary

5 from 43 votes
February 21, 2024
Jump to Recipe

Need a little pick me up?! These gluten free carrot cake muffins are moist, fluffy, and topped with a cinnamon streusel topping and maple cream cheese glaze. Made in just one bowl, healthy, and bursting with fresh carrot cake flavor.

two gluten free carrot cake muffins stacked on each other

Muffins are forever one of my favorite snacks because they’re basically like cupcakes, but it’s socially acceptable to eat them at any time of day. They’re an easy on the go breakfast, satisfying snack and are just sweet enough to pass as dessert.

These carrot cake muffins feature freshly grated carrots (which is super easy to do if you have a food processor), a mix of almond flour and gluten free all purpose flour, brown sugar and maple syrup for moisture and flavor, eggs, milk, oil and a whole lot of spices!

They’re topped with a four ingredient cinnamon streusel and finished off with a dairy free cream cheese glaze. Same flavor profile as my gluten free carrot cake cookies!

They truly couldn’t be more easy or delicious. I may or may not have eaten four in one day so I think that really speaks to how good they are, yeah?! You have the option to add chopped nuts, but apparently some people even like pineapple in carrot cake?! That’s a whole new world to me! If you love this recipe, try my almond flour banana muffins or carrot cake banana bread next!

ingredients in bowls with labels

How to make carrot cake muffins

Add the peeled carrots to a food processor and process until broken up and completely shredded. 

In a large mixing bowl, whisk together all wet ingredients until combined. Add in the dry ingredients aside from the nuts and carrots and mix well. 

Fold in the chopped walnuts and carrots until everything is well incorporated. The batter should be pretty thick at this point. Use a medium cookie scoop and add the batter to a lined cupcake/muffin tray. Fill about 3/4 of the way up.

two images showing how to make the batter

To make the streusel topping, add the softened butter, flour, sugar and cinnamon to a small bowl. Use a fork, your hands or a pastry cutter to combine the ingredients. It should be crumbly and on the drier side. If it seems too wet, add in a bit more flour. 

Use your fingers to crumble the streusel on top of the muffins. Add more than you think you should, the streusel will separate as the muffins bake. 

Bake at 425 for 2 minutes, then lower the temperature to 350 and bake for 16-20 more minutes. Careful not to over-bake, you don’t want them to become dry. Test them at 16 minutes, a toothpick should come out clean. 

Remove from the oven, let cool as is for 10 minutes, then remove the muffins from the tray and let finish cooling on a cooling rack. Once cool, whisk together the cream cheese and maple syrup and drizzle on top of the muffins. Try my gluten free carrot cake cupcakes next!

Overhead image of the muffins with streusel topping before going in the oven.

The key to a moist texture

Just because these healthy carrot cake muffins are gluten free doesn’t mean they have to be dry and bland, because I promise they aren’t!

The main ingredients in this recipe that keep the muffins moist are the oil, maple syrup, apple sauce, and non-dairy milk. I haven’t tested this recipe with any replacements, so I recommend sticking to those ingredients in the listed proportions for best results.

The other key is the amount of flour used and the bake time! Too much flour can yield muffins (and other baked goods) that are too dry and crumbly.

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However, the almond flour works to both keep the muffins moist and add structure, which is why we use it in addition to the gluten free all purpose flour.

Another thing to keep in mind is that the muffins will continue cooking even after you take them out of the oven.

The muffin tin will still be hot which can dry out the muffins if they’re left in for too long. My suggestion? Remove them and place on a cooling rack after about 10 minutes.

gluten free carrot cake muffins with the wrapper pulled off

Do you need to add xanthan gum to gluten free muffins?

Even though these muffins are gluten free, you don’t need to add any extra xanthan gum to the recipe.

I recommend sticking with the Bob’s Red Mill GF 1:1 Baking Flour, but if you use a different one just make sure it has xanthan gum in the mix. If you aren’t gluten free, just regular AP flour will work!

How to store

Once prepared, these muffins will store at room temperature for 3-5 days. Because of the apple sauce, they do need a little bit of air to breathe, so I recommend storing them in a tupperware container with the lid slightly ajar for best results.

carrot cake muffins stacked on a wire rack

Ingredient swaps

EGGS. You can sub the eggs for a vegan alternative, and flavor-wise they will be great, but the texture will be much more dense and the muffins won’t rise as much. I’d suggest either flax eggs or a store bought egg replacer like Bob’s Red Mill.

SUGAR. In most recipes you can use honey and maple syrup interchangeably, but I do not recommend using honey in these carrot cake muffins.

The maple syrup adds a bit more moisture than the honey and makes the final muffins a bit fluffier. If that’s all you have, you can get away with it, but keep in mind the batter will be a bit thicker and I suggest baking for 1-2 minutes less than recommended.

CARROTS. You can swap the fresh carrots for store bought grated carrots, but the texture and flavor is much better with fresh carrots, so I recommend this method. It’s super easy if you just use a food processor or a grater.

FLOUR. If you want to make these nut free, you can swap the 1 cup of almond flour for an additional 1/2 cup of gluten free all purpose flour. If you are not gluten free, simply swap the GF all purpose for regular all purpose flour.

gluten free carrot cake muffins with a bite taken out on parchment paper

Still hungry? Try these snacks next!

  • Gluten Free Blueberry Muffins
  • Gluten Free Banana Muffins
  • Blueberry Banana Bread
  • Gluten Free Banana Bread
  • Mini Chocolate Chip Muffins

Follow along on on instagram and subscribe to my email list for more recipes and updates. Leave a comment and rating below if you try this recipe and let us know how it turns out!

5 from 43 votes

Gluten Free Carrot Cake Muffins

by: claire cary

Need a little pick me up?! These carrot cake muffins are moist, fluffy, and topped with a cinnamon streusel topping and maple cream cheese glaze. Made in just one bowl, gluten free, and bursting with fresh carrot cake flavor.
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
12

Ingredients

Wet

  • ½ cup light brown sugar
  • ¼ cup maple syrup
  • ⅓ cup oil avocado, vegetable etc.
  • ¼ cup milk dairy or nondairy
  • 2 large eggs
  • 1 teaspoon vinegar I used apple cider
  • ⅓ cup apple sauce
  • 1 teaspoon vanilla

Dry:

  • 1 ½ cup gluten free all purpose baking flour
  • 1 cup blanched almond flour see notes for subs
  • 1 ½ teaspoon baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon cinnamon
  • ½ teaspoon ginger
  • ½ teaspoon nutmeg
  • ¼ teaspoon cloves
  • ½ teaspoon salt
  • 1 ¼ cup fresh grated carrots about 2 large carrots
  • ½ cup finely chopped walnuts optional

Streusel:

  • 3 tablespoons gluten free all purpose baking flour
  • 3 tablespoons brown sugar
  • ½ teaspoon cinnamon
  • 1 ½ tablespoons softened butter or refined coconut oil

Cream Cheese Glaze:

  • 4 tablespoons plain cream cheese I used Kite Hill dairy free
  • 2-3 tablespoons maple syrup
US Customary – Metric

Instructions

  • Preheat the oven to 425 degrees Fahrenehit. 
  • Add the peeled and chopped carrots to a food processor and process until broken up and completely shredded. 
  • In a large mixing bowl, whisk together all wet ingredients until combined. 
  • Add in the dry ingredients aside from the nuts and carrots and mix well with a wooden spoon. Be sure to spoon and level the flour, don’t scoop right from the bag.
  • Fold in the chopped walnuts and carrots until everything is well incorporated. The batter should be pretty thick at this point, but that is key to a muffin with a nice round top!
  • Use a spoon or cookie scoop and add the batter to a lined cupcake/muffin tray. Fill about 3/4 of the way up.
  • To make the streusel topping, add the softened butter, flour, sugar and cinnamon to a small bowl.
  • Use a fork, your hands or a pastry cutter to combine the ingredients. It should be crumbly and on the drier side. If it seems too wet, add in a bit more flour. 
  • Use your fingers to crumble the streusel on top of the muffins. Add more than you think you should, the streusel will separate as the muffins bake. 
  • Bake at 425 for 2 minutes, then lower the temperature to 350 and bake for 16-20 more minutes. 
  • Careful not to over-bake, you don’t want them to become dry. Test them at 16 minutes, a toothpick should come out clean, but add about 2 more minutes at a time as needed. 15 is usually perfect in my oven!
  • Remove from the oven, let cool as is for 10 minutes, then remove the muffins from the tray and let finish cooling on a cooling rack. 
  • Once cool, whisk together the cream cheese and maple syrup and drizzle on top of the muffins.

Notes

You can use pre-shredded carrots from a bag if you prefer, but the texture and flavor is much better with fresh carrots, so I recommend this method.
You can sub the almond flour for oat flour, but cut back on the bake time by just 1-2 minutes since oat flour is more absorbent than almond.
You can sub the eggs for a vegan alternative, and flavor-wise they will be great, but the texture will be much more dense and the muffins won’t rise as much. I’d suggest either flax eggs or a store bought egg replacer like Bob’s Red Mill.
Serving: 1muffin / Calories: 276kcal / Carbohydrates: 37g / Protein: 5.1g / Fat: 12.3g / Fiber: 2g / Sugar: 16.4g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Vegan Gluten Free Banana Bread
  2. Almond Flour Banana Muffins
  3. Protein Banana Bread
  4. Strawberry Protein Energy Bites
5 from 43 votes (11 ratings without comment)

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Comments

  1. Bec
    August 17, 2025

    Hi Claire, would swapping the grated carrot with pureed carrot (or other pureed veggies) work for this recipe? Just trying to thoroughly hide fruit and vegetables 😉 Thanks!

    Reply
    1. Claire Cary
      August 19, 2025

      I don’t recommend that because the pureed carrot will act more like a liquid ingredient than the grated carrot would. It would just change the recipe too much unfortunately!

      Reply
  2. G
    August 8, 2025

    So delicious!!! Gone in one day! Love the texture, flavor, and just everything about them!! Question: Could i make these into a loaf?5 stars

    Reply
    1. Claire Cary
      August 12, 2025

      Yes! I’d bake at 350 and start with about 55 minutes and adjust from there.

      Reply
  3. Anamink
    June 24, 2025

    I don’t generally leave comments on recipes, but these muffins are so outstanding that I had to say something. I had been really craving carrot cake, and this recipe’s combination of being gluten-free, low in added sugars, and in an easy-to-take-to-work muffin form made it perfect for me.

    These are super easy to make, and they are DELICIOUS. Even my mom, who does not have to eat gluten-free, is now addicted to these. They taste like a “real” carrot cake rather than just a spice cake with some carrots thrown in, and the texture is somehow dense and fluffy at the same time. Super satisfying midday work snack, and I found they freeze and thaw quite well.

    Thank you for sharing this wonderful recipe!5 stars

    Reply
    1. Claire Cary
      June 25, 2025

      Thank you so much! So glad you found a winner 🙂

      Reply
  4. RubyThroat
    June 7, 2025

    These muffins turned out delicious! I made 24 and I think they will disappear in no time: fluffy, huge, great tasting!5 stars

    Reply
  5. Nikki
    May 30, 2025

    Oh.My. Gee. These are just so yummy!5 stars

    Reply
  6. Jo
    April 22, 2025

    After eating these muffins, we can’t wait to start making recipes from this website! I see brownie cookies in my near future!5 stars

    Reply
    1. Claire Cary
      April 23, 2025

      Yay! Can’t wait to see what else you make 🙂

      Reply
  7. Jo
    April 20, 2025

    These were absolutely delicious! My daughter tried them and sent me the recipe stating you will not know these are gluten free. My husband and I sampled fresh out of the oven. He also served them warm with ice cream after dinner tonight. My son is severely gluten sensitive and loved them Thank you! I added extra gf flour as I was out of almond flour and used milk and butter.5 stars

    Reply
    1. Claire Cary
      April 22, 2025

      So glad you made them work for you! Thanks, Jo!

      Reply
  8. Jennifer
    February 26, 2025

    How can I make this recipe vegan?

    Reply
    1. Claire Cary
      February 27, 2025

      I explain this in the post!

      Reply
  9. Molly
    February 23, 2025

    Can’t tell there are GF. Very good have made multiple times5 stars

    Reply
    1. Claire Cary
      February 24, 2025

      Thank you, Molly!

      Reply
  10. Leigha
    February 5, 2025

    Such a TASTY recipe and easy to make! I subbed the applesauce with pumpkin because that’s what I had on hand. 10/10 delicious! Will be making these again.5 stars

    Reply
    1. Claire Cary
      February 5, 2025

      So glad it worked with the pumpkin! Thanks, Leigha!

      Reply
  11. Elle
    January 19, 2025

    This is a do-not-miss recipe!! I made them for my kids as mini muffins with King Arthur M4M flour, Kirkland blanched almond flour, no walnuts, and substituted yogurt for applesauce since I didn’t have any. I also used 1 1/2 cups tightly packed, finely shredded carrots and they just melt into the cake so you can hardly tell they’re there. The cake is lightly sweet so the streusel topping provides a nice sweet contrast. The whole family loves them. Thank you for this amazing recipe, I will be making these again!!5 stars

    Reply
    1. Claire Cary
      January 20, 2025

      Sounds perfect! Thanks, Elle!

      Reply
  12. Joanne
    January 18, 2025

    Wow!
    These are just fantastic! I am so glad to have found your website by looking up “Gluten Free carrot muffins” and I cannot wait to make more of your recipes! I purchased the e-book right away. Thank you for making the perfect muffin recipe! I forgot the maple syrup, but the texture was still excellent!
    PS – This is my first comment ever, on any food blog, website etc. Since I was diagnosed eight years ago as a celiac, I have never found any baking recipe that I could truly endorse and give a 5/5!5 stars

    Reply
    1. Claire Cary
      January 20, 2025

      Thank you, Joanne I really appreciate it! Can’t wait to see what else you make!

      Reply
  13. Chrissandra
    January 8, 2025

    The carrot cake muffins came out amazing, soft, fluffy and moist😋. I substituted the walnuts with peanuts. And I didn’t do the topping, it was too sweet for me. But another then that I did the exact recipe. I will definitely make these muffins again.5 stars

    Reply
    1. Claire Cary
      January 8, 2025

      Sounds perfect! Thanks, Chrissandra!

      Reply
  14. Cassandra
    December 31, 2024

    I never leave reviews but this recipe was too good not to! I’ve made these a few times as the entire family enjoys them 🙂5 stars

    Reply
    1. Claire Cary
      December 31, 2024

      Thank you Cassandra! Reviews are always very much appreciated 🙂

      Reply
  15. Hayley
    October 12, 2024

    These are so yummy and fluffy.
    I made my batch into mini muffins and added raisins to it. I baked them for 2 min at 425 degrees -like the recipe recommended and then 8 min at 350. Definitely going to become a family favorite!5 stars

    Reply
    1. Claire Cary
      October 14, 2024

      Perfect! Love the idea of mini muffins.

      Reply
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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