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Meal Type » Desserts » Gluten Free Chocolate Cupcakes

Gluten Free Chocolate Cupcakes

Claire Cary

By

Claire Cary

4.99 from 79 votes
March 11, 2025
Jump to Recipe

These gluten free chocolate cupcakes are rich, moist, fluffy, spongey and dairy free optional. They’re easy to make and the perfect way to satisfy your chocolate craving! 

gluten free chocolate cupcakes on a wood baord

An oldie but goodie Eat With Clarity recipe, but now even better! This gluten free chocolate cupcake recipe is one of the first recipes on the blog, but it was time for a major upgrade. Both to the recipe and to the photos!

These cupcakes are more rich, easier to make, and better than ever. With a fluffy and perfectly sweet sponge and silky smooth dairy free buttercream, this is the perfect chocolate treat for every occasion.

I feel like cupcakes and cakes are desserts that get reserved for special occasions, whereas cookies are an everyday thing, but I’m here to tell you you don’t need an excuse or a holiday to indulge a little! These chocolate cupcakes are fluffy, moist, spongey, cakey, chocolatey, perfectly sweet, and all the things a chocolate cupcake should be. With the perfect amount of rich chocolate density like my brownie cookies.

They’re both gluten free and dairy free, but if you did a blind taste test, I promise you would have NO idea. Try my mini chocolate cake, gluten free snack cake or dairy free cupcakes next!

Before we get started…

  • You can use either hot brewed coffee or hot water here. I like coffee to enhance the chocolate flavor, but you can also use boiling water and add some espresso powder.
  • If you don’t have an electric mixer, a whisk will work just fine!
  • Be sure to use a good quality cocoa powder. We aren’t using any other form of chocolate for this recipe, so it’s key to get that rich flavor! Same with my gluten free red velvet cupcakes.
ingredients for the chocolate cupcakes

How to make gluten free chocolate cupcakes

First, whisk together all dry ingredients. Beat in all wet ingredients with an electric mixer just until combined. Careful not to over mix, but make sure all ingredients from the bottom of the bowl are well combined.

Once the batter is ready, use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 2/3 of the way full. 

Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.

They will continue to cook slightly as they sit because the tray is still hot, so careful not to over bake because this will dry out the cupcakes.

In my oven, they are generally done at the 21 minute mark, but all ovens are different. Try my gluten free funfetti cupcakes or gluten free chocolate loaf cake next!

Whisking together the batter in a glass bowl.

Key ingredients

FLOUR. I used the Bob’s Red Mill GF 1:1 All Purpose Baking Flour for this recipe which I recommend!

SUGAR. A mix of white sugar and brown sugar add such a nice flavor to these gluten free chocolate cupcakes. I do not recommend any liquid sweeteners here, but you can safely sub with coconut sugar.

OIL. Any plain, neutral flavored oil will work here. I used refined avocado oil, olive oil is also delicious and adds a rich flavor.

EGGS. Two eggs will help bind all ingredients together and help make the cupcakes nice and fluffy.

COCOA. Necessary for the chocolate flavor of course!

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HOT WATER OR COFFEE. I love using brewed coffee to really enhance the chocolate flavor, but you can also use hot water and add some espresso powder.

Before and after baking the recipe.

How to make chocolate buttercream frosting

Dairy free buttercream is actually much easier than you would think. Buttercream is essentially a mixture of powdered sugar and butter, so to make it dairy free, all you need to do is use dairy free butter.

You want to use room temperature butter so it’s easy to beat but not too soft, but if yours was in the fridge, microwave for about 20 seconds and you should be good to go.

Add the butter to a large mixing bowl and beat with an electric mixer until fluffy. Then, beat in the cocoa powder and powdered sugar until thick and creamy. Finally, beat in the milk and vanilla.

I used these large piping tips to get the ruffled look, but you can also take a blob of buttercream on a knife and swirl it around and it’ll taste just the same.

If you are going to use piping tips, the consistency of the buttercream is really important. Too thin and it won’t hold the shape, too thick and it won’t twirl around the cupcake. When in doubt, this video tutorial is really helpful when frosting!

bite taken out of the chocolate cupcake to show fudgy texture

The best flour for gluten free baking

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result.

Whichever you use, make sure it has xanthan gum in the mix. 

This recipe does not call for almond flour because I wanted to keep it nut free, but you can try my almond flour chocolate cake instead! It’s just as rich and delicious, I promise!

up close of the gluten free chocolate cupcake with frosting on top

How to store and freeze

Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results. Keeping them sealed will ensure these cupcakes stay nice and moist.

If you’re wondering if gluten free cupcakes can be frozen, the short answer is yes!

However, you’ll want to freeze them before they are frosted. I do not recommend storing these in the fridge, because gluten free baked goods can dry out if they get too cold unfortunately.

Tips to keep gluten free cupcakes moist

These gluten free chocolate cupcakes are made extra moist with the help of some hot water, eggs and oil. I used avocado oil but melted dairy free butter also does the trick.

The eggs also helps the cupcakes get nice and fluffy too. These cupcakes will be (and stay) nice and moist as long as they are not over baked!

gluten free chocolate cupcake cut in half to show texture

Try these recipes next

  • Chocolate Energy Bites
  • Chocolate Peppermint Cookies
  • Red Velvet Cupcakes
  • Lemon Cupcakes
  • Gluten Free Mini Cupcakes

Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, if you make this recipe, be sure to tag me on instagram and leave a comment below so I can see your creation!

4.99 from 79 votes

Gluten Free Chocolate Cupcakes

by: claire cary

These gluten free chocolate cupcakes are moist, fluffy, spongey and dairy free optional. They’re easy to make, just sweet enough and made ultra delicious with a simple chocolate buttercream. They’re the perfect way to satisfy your chocolate craving! 
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
12

Ingredients

Wet

  • ⅔ cup white sugar
  • ¼ cup light brown sugar
  • 2 eggs at room temperature
  • 2 teaspoons vanilla extract
  • ⅓ cup oil I like olive oil for a rich flavor, but any oil works
  • ⅔ cup boiling water or hot brewed coffee
  • 1 teaspoon apple cider vinegar

Dry

  • ¾ cup + 2 tablespoons Bob’s Red Mill GF 1:1 All Purpose Baking Flour spoon and level to measure
  • ½ cup cocoa powder spoon and level to measure
  • ¼ teaspoon salt
  • ½ teaspoon baking soda
  • ¾ teaspoon baking powder
  • 1/2-1 teaspoon espresso powder optional but recommended for a richer chocolate flavor

Buttercream

  • ½ cup unsalted butter at room temperature, dairy or non-dairy
  • 2-3 tablespoons milk
  • 2 teaspoons vanilla
  • ½ cup cocoa powder or more to taste
  • 2-3 cups powdered sugar
  • Sprinkles for topping
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit and line a muffin tray with liners and set aside.
  • Whisk together all dry ingredients in a large bowl.
  • Beat in all wet ingredients on medium speed until well combined, making sure you get all of the dry ingredients from the bottom. the batter will be on the thinner side, but not too runny.
  • Use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 3/4 of the way full. 
  • Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.
  • They will continue to cook slightly as they sit, so careful not to over bake because this will dry out the cupcake. In my oven, they are generally done at the 20 minute mark. 
  • Remove from the oven and let cool in the pan for about 10-15 minutes, then transfer to a wire rack to finish cooling.
  • To make the buttercream, beat the room temperature butter with an electric mixer until fluffy.
  • Beat in the cocoa powder. Beat in 2 cups of powdered sugar, then beat in 2 tbsp of milk and vanilla.
  • If you want the frosting more chocolatey, you can sub some of the sugar for more cocoa, or vice versa for less chocolate. If the frosting is too thin, beat in a bit more sugar, too thick add more milk until it reaches your desired consistency.
  • Let the cupcakes cool completely before frosting. Frost with piping tips or keep it simple and use a knife!

Notes

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result. Whichever you use, make sure it has xanthan gum in the mix. 
Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results.
The espresso powder helps bring out the chocolate flavor, but it is optional if you don’t have it. Another option is to sub the hot water for hot coffee. 
The frosting will make enough to frost all cupcakes generously with a knife, but if you want to pipe them on tall, I suggest making a 1.5 batch of the frosting or even double it.
Serving: 1cupcake with frosting / Calories: 281kcal / Carbohydrates: 49g / Protein: 3.9g / Fat: 8.7g / Fiber: 2.9g / Sugar: 25g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Gluten Free Mini Cupcakes
  2. Flourless Chocolate Cake
  3. Vegan Gluten Free Chocolate Cupcakes
  4. Matcha Cupcakes
4.99 from 79 votes (27 ratings without comment)

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Comments

  1. Luisa
    May 14, 2024

    Lovely recipe! I replaced the boiling water/espresso powder with just hot coffee and it worked just fine.

    I also iced with cream cheese icing instead and it was lovely!5 stars

    Reply
  2. Francesca
    May 13, 2024

    Just made these last night to test before making for my son’s graduation party. These are AMAZING! The texture is perfectly spongy and moist and the taste was delicious! Passed my youngest son and husband test! Thank you!5 stars

    Reply
    1. Claire Cary
      May 13, 2024

      Thank you, Francesca!

      Reply
  3. Jaime
    May 11, 2024

    These were THE BEST gluten free cupcakes ever!! I made them for a family gathering, and they were honestly undetectably gluten free. To the point that when my mom ate one, she was actually worried for my mother in law (who is gluten free) who was eating one! Needless to say, this is definitely my new go to recipe for gluten free cake!5 stars

    Reply
    1. Claire Cary
      May 13, 2024

      Thank you, Jaime!

      Reply
  4. Keri
    March 21, 2024

    I’m not much of a baker, so forgive me if this is a silly question. Do you mix all the wet ingredients together before mixing into the dry ingredients? Or am I adding the wet ingredients into the dry one at a time? Every recipe I’ve made has the wet ingredients all mixed together and the add the mixed dry ingredients in.

    Reply
    1. Claire Cary
      March 21, 2024

      You want to mix all the dry, then add in all of the wet and mix together!

      Reply
  5. Monique
    March 18, 2024

    The BEST gluten free cupcakes I’ve ever had. This recipe is perfect. Thank you for sharing.5 stars

    Reply
    1. Claire Cary
      March 18, 2024

      Thank you, Monique!

      Reply
  6. Robyn
    March 6, 2024

    The heavens opened up and the angels sang! These cupcakes are the very best gluten free cupcakes I’ve ever made. I thank you, and my g/f grandson thanks you, so much for this recipe. I followed your recipe exactly and wouldn’t change a thing.5 stars

    Reply
    1. Claire Cary
      March 7, 2024

      Thank you, Robyn! Makes me so happy to hear 🙂

      Reply
  7. Teresa
    February 1, 2024

    I’ve never written a review before but felt I just had to after making these choc cupcakes! I think I have died and gone to heaven!! Thankyou so much for a perfectly wonderful recipe. Instead of using Bobs Red Mill gf flour; I used my own blend of cup 4 cup and they turned out absolutely perfect. Light and fluffy. I would defy any gluten eating person to tell the difference! 🙂5 stars

    Reply
    1. Claire Cary
      February 1, 2024

      Thank you, Teresa! So happy you enjoyed these 🙂

      Reply
  8. Cheri
    January 19, 2024

    I wish I could attach a picture. I followed recipe and the batter was thick. Turned out weird almost brownies. Tried again, followed recipe to a T and same thing.

    Reply
    1. Claire Cary
      January 19, 2024

      You can email a picture to claire@eatwithclarity.com and I’d be happy to help troubleshoot! The batter should not be thick.

      Reply
  9. Kimberly
    December 22, 2023

    I usually pay someone to make my daughter gluten and dairy free cupcakes every holiday because I haven’t found a recipe that tasted great.
    We made this recipe for her Christmas party at school and they were a hit! I couldn’t believe how flavorful they were and so moist. Thank you so much for sharing this recipe and for all the side notes. My mommas heart is full when my daughter can enjoy good things even with her dietary needs.5 stars

    Reply
    1. Claire Cary
      December 26, 2023

      Thank you Kimberly! Makes me so happy to hear 🙂

      Reply
  10. Valerie
    December 20, 2023

    When I made these, there was way too much water in it. The second time I halved the water content and it is better. Has anyone had this problem? The taste is good…it is just to runny.

    Reply
    1. Edwina
      May 11, 2025

      Oh, yeah, way too runny. I questioned the ratio of flour to water, and read the recipe a few times. I added more flour, and used less water. And in the end I got yummy yummy cupcakes.4 stars

      Reply
  11. Melissa
    October 24, 2023

    These are awesome. I was wondering how long I should cook these if I made them as mini cupcakes.5 stars

    Reply
    1. Claire Cary
      October 24, 2023

      I suggest starting around 11 minutes and adjusting from there!

      Reply
  12. Libby
    October 22, 2023

    Hi Claire! I was just about to make this recipe for my son’s birthday party and realized I accidentally bought cacao powder instead of cocoa powder. Do you know if cacao will substitute well or should I buy cocoa?

    Reply
    1. Claire Cary
      October 24, 2023

      I suggest cocoa! Cacao will lead to a more bitter flavor!

      Reply
  13. Linda Elston
    October 13, 2023

    Want to make but I don’t know grams (metric) do you have a recipe with conversions?
    Thank you

    Reply
    1. Claire Cary
      October 16, 2023

      You can convert to metric in the recipe card!

      Reply
  14. Ashley
    September 21, 2023

    Making on a Thursday to eat on Sunday. Should I freeze or just keep in airtight container?
    If I freeze, should I let come to room temperature before I frost them?
    Thank you!

    Reply
    1. Claire Cary
      September 22, 2023

      I’d probably freeze, defrost and then frost!

      Reply
  15. Jamie
    July 26, 2023

    After a recent diagnosis of celiac disease, I have been on the hunt for a delicious baked recipe for my family to enjoy. These packed a punch of flavor, were light, fluffy, and so so moist. A keeper for sure! Must try.5 stars

    Reply
    1. Claire Cary
      July 27, 2023

      So glad you were able to enjoy these! Hope you try some of our other recipes as well 🙂

      Reply
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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