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Meal Type » Desserts » Gluten Free Chocolate Cupcakes

Gluten Free Chocolate Cupcakes

Claire Cary

By

Claire Cary

4.99 from 79 votes
March 11, 2025
Jump to Recipe

These gluten free chocolate cupcakes are rich, moist, fluffy, spongey and dairy free optional. They’re easy to make and the perfect way to satisfy your chocolate craving! 

gluten free chocolate cupcakes on a wood baord

An oldie but goodie Eat With Clarity recipe, but now even better! This gluten free chocolate cupcake recipe is one of the first recipes on the blog, but it was time for a major upgrade. Both to the recipe and to the photos!

These cupcakes are more rich, easier to make, and better than ever. With a fluffy and perfectly sweet sponge and silky smooth dairy free buttercream, this is the perfect chocolate treat for every occasion.

I feel like cupcakes and cakes are desserts that get reserved for special occasions, whereas cookies are an everyday thing, but I’m here to tell you you don’t need an excuse or a holiday to indulge a little! These chocolate cupcakes are fluffy, moist, spongey, cakey, chocolatey, perfectly sweet, and all the things a chocolate cupcake should be. With the perfect amount of rich chocolate density like my brownie cookies.

They’re both gluten free and dairy free, but if you did a blind taste test, I promise you would have NO idea. Try my mini chocolate cake, gluten free snack cake or dairy free cupcakes next!

Before we get started…

  • You can use either hot brewed coffee or hot water here. I like coffee to enhance the chocolate flavor, but you can also use boiling water and add some espresso powder.
  • If you don’t have an electric mixer, a whisk will work just fine!
  • Be sure to use a good quality cocoa powder. We aren’t using any other form of chocolate for this recipe, so it’s key to get that rich flavor! Same with my gluten free red velvet cupcakes.
ingredients for the chocolate cupcakes

How to make gluten free chocolate cupcakes

First, whisk together all dry ingredients. Beat in all wet ingredients with an electric mixer just until combined. Careful not to over mix, but make sure all ingredients from the bottom of the bowl are well combined.

Once the batter is ready, use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 2/3 of the way full. 

Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.

They will continue to cook slightly as they sit because the tray is still hot, so careful not to over bake because this will dry out the cupcakes.

In my oven, they are generally done at the 21 minute mark, but all ovens are different. Try my gluten free funfetti cupcakes or gluten free chocolate loaf cake next!

Whisking together the batter in a glass bowl.

Key ingredients

FLOUR. I used the Bob’s Red Mill GF 1:1 All Purpose Baking Flour for this recipe which I recommend!

SUGAR. A mix of white sugar and brown sugar add such a nice flavor to these gluten free chocolate cupcakes. I do not recommend any liquid sweeteners here, but you can safely sub with coconut sugar.

OIL. Any plain, neutral flavored oil will work here. I used refined avocado oil, olive oil is also delicious and adds a rich flavor.

EGGS. Two eggs will help bind all ingredients together and help make the cupcakes nice and fluffy.

COCOA. Necessary for the chocolate flavor of course!

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HOT WATER OR COFFEE. I love using brewed coffee to really enhance the chocolate flavor, but you can also use hot water and add some espresso powder.

Before and after baking the recipe.

How to make chocolate buttercream frosting

Dairy free buttercream is actually much easier than you would think. Buttercream is essentially a mixture of powdered sugar and butter, so to make it dairy free, all you need to do is use dairy free butter.

You want to use room temperature butter so it’s easy to beat but not too soft, but if yours was in the fridge, microwave for about 20 seconds and you should be good to go.

Add the butter to a large mixing bowl and beat with an electric mixer until fluffy. Then, beat in the cocoa powder and powdered sugar until thick and creamy. Finally, beat in the milk and vanilla.

I used these large piping tips to get the ruffled look, but you can also take a blob of buttercream on a knife and swirl it around and it’ll taste just the same.

If you are going to use piping tips, the consistency of the buttercream is really important. Too thin and it won’t hold the shape, too thick and it won’t twirl around the cupcake. When in doubt, this video tutorial is really helpful when frosting!

bite taken out of the chocolate cupcake to show fudgy texture

The best flour for gluten free baking

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result.

Whichever you use, make sure it has xanthan gum in the mix. 

This recipe does not call for almond flour because I wanted to keep it nut free, but you can try my almond flour chocolate cake instead! It’s just as rich and delicious, I promise!

up close of the gluten free chocolate cupcake with frosting on top

How to store and freeze

Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results. Keeping them sealed will ensure these cupcakes stay nice and moist.

If you’re wondering if gluten free cupcakes can be frozen, the short answer is yes!

However, you’ll want to freeze them before they are frosted. I do not recommend storing these in the fridge, because gluten free baked goods can dry out if they get too cold unfortunately.

Tips to keep gluten free cupcakes moist

These gluten free chocolate cupcakes are made extra moist with the help of some hot water, eggs and oil. I used avocado oil but melted dairy free butter also does the trick.

The eggs also helps the cupcakes get nice and fluffy too. These cupcakes will be (and stay) nice and moist as long as they are not over baked!

gluten free chocolate cupcake cut in half to show texture

Try these recipes next

  • Chocolate Energy Bites
  • Chocolate Peppermint Cookies
  • Red Velvet Cupcakes
  • Lemon Cupcakes
  • Gluten Free Mini Cupcakes

Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, if you make this recipe, be sure to tag me on instagram and leave a comment below so I can see your creation!

4.99 from 79 votes

Gluten Free Chocolate Cupcakes

by: claire cary

These gluten free chocolate cupcakes are moist, fluffy, spongey and dairy free optional. They’re easy to make, just sweet enough and made ultra delicious with a simple chocolate buttercream. They’re the perfect way to satisfy your chocolate craving! 
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
12

Ingredients

Wet

  • ⅔ cup white sugar
  • ¼ cup light brown sugar
  • 2 eggs at room temperature
  • 2 teaspoons vanilla extract
  • ⅓ cup oil I like olive oil for a rich flavor, but any oil works
  • ⅔ cup boiling water or hot brewed coffee
  • 1 teaspoon apple cider vinegar

Dry

  • ¾ cup + 2 tablespoons Bob’s Red Mill GF 1:1 All Purpose Baking Flour spoon and level to measure
  • ½ cup cocoa powder spoon and level to measure
  • ¼ teaspoon salt
  • ½ teaspoon baking soda
  • ¾ teaspoon baking powder
  • 1/2-1 teaspoon espresso powder optional but recommended for a richer chocolate flavor

Buttercream

  • ½ cup unsalted butter at room temperature, dairy or non-dairy
  • 2-3 tablespoons milk
  • 2 teaspoons vanilla
  • ½ cup cocoa powder or more to taste
  • 2-3 cups powdered sugar
  • Sprinkles for topping
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit and line a muffin tray with liners and set aside.
  • Whisk together all dry ingredients in a large bowl.
  • Beat in all wet ingredients on medium speed until well combined, making sure you get all of the dry ingredients from the bottom. the batter will be on the thinner side, but not too runny.
  • Use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 3/4 of the way full. 
  • Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.
  • They will continue to cook slightly as they sit, so careful not to over bake because this will dry out the cupcake. In my oven, they are generally done at the 20 minute mark. 
  • Remove from the oven and let cool in the pan for about 10-15 minutes, then transfer to a wire rack to finish cooling.
  • To make the buttercream, beat the room temperature butter with an electric mixer until fluffy.
  • Beat in the cocoa powder. Beat in 2 cups of powdered sugar, then beat in 2 tbsp of milk and vanilla.
  • If you want the frosting more chocolatey, you can sub some of the sugar for more cocoa, or vice versa for less chocolate. If the frosting is too thin, beat in a bit more sugar, too thick add more milk until it reaches your desired consistency.
  • Let the cupcakes cool completely before frosting. Frost with piping tips or keep it simple and use a knife!

Notes

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result. Whichever you use, make sure it has xanthan gum in the mix. 
Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results.
The espresso powder helps bring out the chocolate flavor, but it is optional if you don’t have it. Another option is to sub the hot water for hot coffee. 
The frosting will make enough to frost all cupcakes generously with a knife, but if you want to pipe them on tall, I suggest making a 1.5 batch of the frosting or even double it.
Serving: 1cupcake with frosting / Calories: 281kcal / Carbohydrates: 49g / Protein: 3.9g / Fat: 8.7g / Fiber: 2.9g / Sugar: 25g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Gluten Free Mini Cupcakes
  2. Flourless Chocolate Cake
  3. Vegan Gluten Free Chocolate Cupcakes
  4. Matcha Cupcakes
4.99 from 79 votes (27 ratings without comment)

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Comments

  1. Cass
    December 5, 2025

    Could you make these cupcakes in advance and freeze them until you are ready to frost them?

    Reply
    1. Claire Cary
      December 8, 2025

      Yes!

      Reply
  2. Lisa
    October 19, 2025

    Do you think I could add a scoop of protein powder to this? If

    Reply
    1. Claire Cary
      October 20, 2025

      I don’t recommend that here!

      Reply
  3. Anna
    October 18, 2025

    I made these last year for baby shower, they were a hit, people who are not GF loved them. I am making them again today for the 1st birthday party tomorrow, can i frost them the day before? If so, would they stay at room temperature. Thank you5 stars

    Reply
    1. Claire Cary
      October 20, 2025

      So happy to hear that! Yes, they should be fine for just 1 day.

      Reply
  4. Madison
    September 24, 2025

    Could I make this into a cake?!

    Reply
    1. Claire Cary
      September 25, 2025

      I’d just make my gluten free chocolate cake instead!

      Reply
  5. Serene
    September 22, 2025

    Great recipe for lovely rich cupcakes. Yummy!5 stars

    Reply
  6. Samantha Patenaude
    August 1, 2025

    They were SUPER easy and fun to make and tased like a regular cupcake. This has always been the recipe I use every time I make cupcakes!5 stars

    Reply
    1. Claire Cary
      August 5, 2025

      Thank you, Samantha!

      Reply
  7. Katie
    July 28, 2025

    So good! I made these when I had 20 minutes for to bake and brought them to my office. No one had any idea that they were gluten free! Thank you so much for this recipe!5 stars

    Reply
  8. Sarah
    July 13, 2025

    I’m not really one to leave reviews. But – these cupcakes! They are everything. So good. So simple. Amazing, chocolatey heaven. No one would ever know they’re gluten free. I also love that they’re dairy free. Thank you for this recipe!5 stars

    Reply
    1. Claire Cary
      July 16, 2025

      Thanks so much, Sarah!

      Reply
  9. Lena
    July 12, 2025

    These are the most amazing gluten free cupcakes I’ve ever made. I do swap the flour for KA Gluten Free Measure for Measure but otherwise do everything the same. No one even knows they’re gluten free unless I tell them.5 stars

    Reply
    1. Claire Cary
      July 16, 2025

      Thank you, Lena!

      Reply
  10. Amy
    May 2, 2025

    I used water and not the coffee because I was short on time, but these cupcakes are probably the best gluten free cupcakes I’ve ever had. I’ve tried A LOT of recipes over the 10 years that I’ve been gluten free and this is the best. They are so fluffy and moist. I don’t remember what regular cake tastes like anymore but I can say these don’t scream gluten free. Thank you for such a great recipe.5 stars

    Reply
    1. Claire Cary
      May 2, 2025

      Thank you, Amy! So so happy you love these 🙂

      Reply
  11. Voni Rueb
    April 2, 2025

    to make the frosting dairy free I see you can use non-dairy butter, but the 2-3 tablespoons of milk could I us almond or coconut milk in place of it?

    Reply
    1. Claire Cary
      April 2, 2025

      Yes!

      Reply
  12. Chelsea
    March 25, 2025

    Looks great, but not entirely dairy free. The description says that it has a “dairy free” butter cream recipe, but the first ingredient in for the frosting is butter. If you have a milk allergy, steer clear of this frosting.

    Reply
    1. Claire Cary
      March 25, 2025

      I state in the notes that you can use dairy free butter.

      Reply
  13. Lucy
    March 15, 2025

    For those of you at high altitude (I’m at 5,300), here is what I changed, and it worked very well:
    Decreased water by 2 tbsp. Increased flour by 1 Tbsp. Decreased leavening to about 1/3 tsp. soda and 1/2 tsp. baking powder.
    Cupcakes had a nice rounded top, not flat or peaked. Still plenty fluffy. I was actually hoping they’d be a little less fluffy. : )

    Reply
  14. Denise
    March 3, 2025

    I have made these cupcakes. Can I use this recipe to make an 8 inch, round layer cake? If so, what would the baking time be?

    Thank you!

    Reply
    1. Claire Cary
      March 4, 2025

      I would just use my gluten free chocolate cake recipe!

      Reply
  15. Inge
    February 25, 2025

    Oh my these are tasty.. I used the 1/4 cup brown sugar called for and 1/3 cup raw honey instead of white sugar and let me say these are yummy!5 stars

    Reply
    1. Claire Cary
      February 25, 2025

      Perfect! Glad it worked well with the honey!

      Reply
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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