Subscribe for our FREE 30 minute meals book!

  • Recipes
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
  • Dessert
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
  • Diet
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
  • About
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop
    • Appetizers & Sides
    • Breakfast
    • Desserts
    • Drinks
    • Lunch & Dinner
    • Noodles & Stir Fries
    • Pasta
    • Salads
    • Snacks
    • Soups & Stews
    • Browse All
  • Dinner
    • Cakes & Cupcakes
    • Chocolate
    • Cookies
    • Egg Free
    • High Protein
    • Nut Free
    • Paleo
    • Refined Sugar Free
    • Vegan
    • Vegetarian
    • Browse All
    • About Claire
    • Work With Me
    • Recipe Ebook
  • Shop

Meal Type » Desserts » Gluten Free Chocolate Cupcakes

Gluten Free Chocolate Cupcakes

Claire Cary

By

Claire Cary

4.99 from 79 votes
March 11, 2025
Jump to Recipe

These gluten free chocolate cupcakes are rich, moist, fluffy, spongey and dairy free optional. They’re easy to make and the perfect way to satisfy your chocolate craving! 

gluten free chocolate cupcakes on a wood baord

An oldie but goodie Eat With Clarity recipe, but now even better! This gluten free chocolate cupcake recipe is one of the first recipes on the blog, but it was time for a major upgrade. Both to the recipe and to the photos!

These cupcakes are more rich, easier to make, and better than ever. With a fluffy and perfectly sweet sponge and silky smooth dairy free buttercream, this is the perfect chocolate treat for every occasion.

I feel like cupcakes and cakes are desserts that get reserved for special occasions, whereas cookies are an everyday thing, but I’m here to tell you you don’t need an excuse or a holiday to indulge a little! These chocolate cupcakes are fluffy, moist, spongey, cakey, chocolatey, perfectly sweet, and all the things a chocolate cupcake should be. With the perfect amount of rich chocolate density like my brownie cookies.

They’re both gluten free and dairy free, but if you did a blind taste test, I promise you would have NO idea. Try my mini chocolate cake, gluten free snack cake or dairy free cupcakes next!

Before we get started…

  • You can use either hot brewed coffee or hot water here. I like coffee to enhance the chocolate flavor, but you can also use boiling water and add some espresso powder.
  • If you don’t have an electric mixer, a whisk will work just fine!
  • Be sure to use a good quality cocoa powder. We aren’t using any other form of chocolate for this recipe, so it’s key to get that rich flavor! Same with my gluten free red velvet cupcakes.
ingredients for the chocolate cupcakes

How to make gluten free chocolate cupcakes

First, whisk together all dry ingredients. Beat in all wet ingredients with an electric mixer just until combined. Careful not to over mix, but make sure all ingredients from the bottom of the bowl are well combined.

Once the batter is ready, use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 2/3 of the way full. 

Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.

They will continue to cook slightly as they sit because the tray is still hot, so careful not to over bake because this will dry out the cupcakes.

In my oven, they are generally done at the 21 minute mark, but all ovens are different. Try my gluten free funfetti cupcakes or gluten free chocolate loaf cake next!

Whisking together the batter in a glass bowl.

Key ingredients

FLOUR. I used the Bob’s Red Mill GF 1:1 All Purpose Baking Flour for this recipe which I recommend!

SUGAR. A mix of white sugar and brown sugar add such a nice flavor to these gluten free chocolate cupcakes. I do not recommend any liquid sweeteners here, but you can safely sub with coconut sugar.

OIL. Any plain, neutral flavored oil will work here. I used refined avocado oil, olive oil is also delicious and adds a rich flavor.

EGGS. Two eggs will help bind all ingredients together and help make the cupcakes nice and fluffy.

COCOA. Necessary for the chocolate flavor of course!

WANT TO SAVE THIS RECIPE?

Enter your email below & we’ll send it straight to your inbox. Plus you’ll get great new recipes from us every week!

HOT WATER OR COFFEE. I love using brewed coffee to really enhance the chocolate flavor, but you can also use hot water and add some espresso powder.

Before and after baking the recipe.

How to make chocolate buttercream frosting

Dairy free buttercream is actually much easier than you would think. Buttercream is essentially a mixture of powdered sugar and butter, so to make it dairy free, all you need to do is use dairy free butter.

You want to use room temperature butter so it’s easy to beat but not too soft, but if yours was in the fridge, microwave for about 20 seconds and you should be good to go.

Add the butter to a large mixing bowl and beat with an electric mixer until fluffy. Then, beat in the cocoa powder and powdered sugar until thick and creamy. Finally, beat in the milk and vanilla.

I used these large piping tips to get the ruffled look, but you can also take a blob of buttercream on a knife and swirl it around and it’ll taste just the same.

If you are going to use piping tips, the consistency of the buttercream is really important. Too thin and it won’t hold the shape, too thick and it won’t twirl around the cupcake. When in doubt, this video tutorial is really helpful when frosting!

bite taken out of the chocolate cupcake to show fudgy texture

The best flour for gluten free baking

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result.

Whichever you use, make sure it has xanthan gum in the mix. 

This recipe does not call for almond flour because I wanted to keep it nut free, but you can try my almond flour chocolate cake instead! It’s just as rich and delicious, I promise!

up close of the gluten free chocolate cupcake with frosting on top

How to store and freeze

Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results. Keeping them sealed will ensure these cupcakes stay nice and moist.

If you’re wondering if gluten free cupcakes can be frozen, the short answer is yes!

However, you’ll want to freeze them before they are frosted. I do not recommend storing these in the fridge, because gluten free baked goods can dry out if they get too cold unfortunately.

Tips to keep gluten free cupcakes moist

These gluten free chocolate cupcakes are made extra moist with the help of some hot water, eggs and oil. I used avocado oil but melted dairy free butter also does the trick.

The eggs also helps the cupcakes get nice and fluffy too. These cupcakes will be (and stay) nice and moist as long as they are not over baked!

gluten free chocolate cupcake cut in half to show texture

Try these recipes next

  • Chocolate Energy Bites
  • Chocolate Peppermint Cookies
  • Red Velvet Cupcakes
  • Lemon Cupcakes
  • Gluten Free Mini Cupcakes

Lastly, if you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, if you make this recipe, be sure to tag me on instagram and leave a comment below so I can see your creation!

4.99 from 79 votes

Gluten Free Chocolate Cupcakes

by: claire cary

These gluten free chocolate cupcakes are moist, fluffy, spongey and dairy free optional. They’re easy to make, just sweet enough and made ultra delicious with a simple chocolate buttercream. They’re the perfect way to satisfy your chocolate craving! 
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
12

Ingredients

Wet

  • ⅔ cup white sugar
  • ¼ cup light brown sugar
  • 2 eggs at room temperature
  • 2 teaspoons vanilla extract
  • ⅓ cup oil I like olive oil for a rich flavor, but any oil works
  • ⅔ cup boiling water or hot brewed coffee
  • 1 teaspoon apple cider vinegar

Dry

  • ¾ cup + 2 tablespoons Bob’s Red Mill GF 1:1 All Purpose Baking Flour spoon and level to measure
  • ½ cup cocoa powder spoon and level to measure
  • ¼ teaspoon salt
  • ½ teaspoon baking soda
  • ¾ teaspoon baking powder
  • 1/2-1 teaspoon espresso powder optional but recommended for a richer chocolate flavor

Buttercream

  • ½ cup unsalted butter at room temperature, dairy or non-dairy
  • 2-3 tablespoons milk
  • 2 teaspoons vanilla
  • ½ cup cocoa powder or more to taste
  • 2-3 cups powdered sugar
  • Sprinkles for topping
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit and line a muffin tray with liners and set aside.
  • Whisk together all dry ingredients in a large bowl.
  • Beat in all wet ingredients on medium speed until well combined, making sure you get all of the dry ingredients from the bottom. the batter will be on the thinner side, but not too runny.
  • Use a cookie scoop or spoon and add the batter in 12 lined cupcake tins, filling about 3/4 of the way full. 
  • Add to the center of the oven for 18-24 minutes. Check at 18 minutes and if a toothpick comes out clean, remove from the oven.
  • They will continue to cook slightly as they sit, so careful not to over bake because this will dry out the cupcake. In my oven, they are generally done at the 20 minute mark. 
  • Remove from the oven and let cool in the pan for about 10-15 minutes, then transfer to a wire rack to finish cooling.
  • To make the buttercream, beat the room temperature butter with an electric mixer until fluffy.
  • Beat in the cocoa powder. Beat in 2 cups of powdered sugar, then beat in 2 tbsp of milk and vanilla.
  • If you want the frosting more chocolatey, you can sub some of the sugar for more cocoa, or vice versa for less chocolate. If the frosting is too thin, beat in a bit more sugar, too thick add more milk until it reaches your desired consistency.
  • Let the cupcakes cool completely before frosting. Frost with piping tips or keep it simple and use a knife!

Notes

There are other GF all purpose baking flours out there, but not all of them are the same blend. You can definitely try using other ones, but it may yield a slightly different result. Whichever you use, make sure it has xanthan gum in the mix. 
Once prepared, these cupcakes will store for about 3-5 days. Keep them in an air tight container at room temperature for best results.
The espresso powder helps bring out the chocolate flavor, but it is optional if you don’t have it. Another option is to sub the hot water for hot coffee. 
The frosting will make enough to frost all cupcakes generously with a knife, but if you want to pipe them on tall, I suggest making a 1.5 batch of the frosting or even double it.
Serving: 1cupcake with frosting / Calories: 281kcal / Carbohydrates: 49g / Protein: 3.9g / Fat: 8.7g / Fiber: 2.9g / Sugar: 25g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Gluten Free Mini Cupcakes
  2. Flourless Chocolate Cake
  3. Vegan Gluten Free Chocolate Cupcakes
  4. Matcha Cupcakes
4.99 from 79 votes (27 ratings without comment)

leave a comment and rating Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Comments

  1. Meghan
    February 23, 2025

    I made these, minus the espresso power because I didn’t have it. They were incredible. By far the best GF cupcake recipe. Thank you5 stars

    Reply
    1. Claire Cary
      February 24, 2025

      Thank you, Meghan!

      Reply
    2. Chocoholic
      June 6, 2025

      Made these and they’re wonderful. Had to skip the vinegar because of allergies. No espresso powder. Canola oil instead of avocado oil. They are moist and chocolatey and wonderful! Even with Trader Joe’s cocoa powder.

      But the recipe only made 12 cupcakes. I had to make a second batch to get 24. Next time I’ll just double it. Does everyone else just make cupcakes that don’t reach the top of the wrappers?? I love making domed cupcakes! About 1/4 cup per wrapper does the trick.5 stars

      Reply
      1. Claire Cary
        June 9, 2025

        So glad you enjoyed these! The recipe states that it makes 12.

        Reply
  2. Molly
    February 4, 2025

    Have you baked these as a cake? If so what is the bake time and temp

    Reply
    1. Claire Cary
      February 4, 2025

      I would just make my gluten free chocolate cake!

      Reply
  3. Sunnie
    February 1, 2025

    I’ve made these 3 times in the last 4 weeks for different functions and everyone has loved them! I had a go-to chocolate cupcake recipe but was looking for a GF one. These have the same taste and texture as my regular ones! I may just use this recipe all the time now.
    I made regular size and minis and the both turned out great. The minis took about 12 1/2 minutes to bake.
    I didn’t try the frosting part of the recipe, I used my own. Thank you for the recipe!5 stars

    Reply
  4. Sean G
    January 13, 2025

    These are the best cupcakes I’ve ever made, GF or not. I’ve made them 5 times now; for my oven 18 minute bake for full size cupcakes and 10 minutes for minis has come out just right using dark nonstick muffin pans. I do make them with the olive oil and espresso powder optional ingredients.

    If you’re making this for the first time consider baking 4 cupcakes as a test batch starting on the low end of the bake time, increasing the bake time for the next batch until you find the best result.

    Great results with king arthur gluten free measure for measure and Ghiardelli dutch cocoa powder. I bought Bob’s GF flour to try with this recipe, but it’s hard to change something that is working so well!5 stars

    Reply
    1. Claire Cary
      January 13, 2025

      Thanks so much, Sean! Really appreciate it!

      Reply
  5. chelsea
    January 7, 2025

    is there anyway i can incorporate buttermilk into this recipe??

    Reply
    1. Claire Cary
      January 7, 2025

      I would probably just find a recipe that calls for buttermilk!

      Reply
  6. Violet
    December 26, 2024

    I love making these for my mom and sisters who are gluten free and dairy free, and my whole family loves theme. One of my sisters also have celiac5 stars

    Reply
  7. Sonia Boccardi
    November 16, 2024

    Can I make the icing ahead of time and leave in fridge?

    Reply
    1. Claire Cary
      November 16, 2024

      Yes, just let it come to room temperature before serving. It will firm up a lot in the fridge.

      Reply
  8. Sierra
    November 15, 2024

    These were great! I did exactly 18 minutes and they were perfect. I also used king Arthur’s GF bread flour since that’s what I had on hand.5 stars

    Reply
    1. Claire Cary
      November 16, 2024

      Perfect! Glad that flour worked well. Thanks, Sierra!

      Reply
  9. Claire
    October 19, 2024

    Have you made these as minis? Wondering about how long they’d take to bake

    Reply
    1. Claire Cary
      October 19, 2024

      I haven’t but I’d guess around 12 minutes.

      Reply
  10. Katelyn
    October 10, 2024

    Can I use cacao powder instead of cocoa powder?

    Reply
    1. Claire Cary
      October 10, 2024

      You can, but the cupcakes may be a bit more bitter in flavor.

      Reply
  11. Ellie
    September 29, 2024

    Does the flour you use contain xanthan gum? My GF baking flour does not contain xanthan gum so I am just wondering how much xanthan gum I would need to add into this recipe 🙂 looking forward to giving this a go

    Reply
    1. Claire Cary
      October 1, 2024

      Yes, you need one with xanthan gum!

      Reply
  12. Jeanette
    August 3, 2024

    Brilliant! My grandson who is gluten and dairy free, just loved them5 stars

    Reply
    1. Claire Cary
      August 6, 2024

      Love to hear it!

      Reply
  13. Sophie
    July 10, 2024

    This recipe sounds amazing but I was just wondering what the addition of apple cider vinegar is for. Can it be left out or substituted?

    Reply
    1. Claire Cary
      July 10, 2024

      Activates the baking soda! Any kind of vinegar is fine.

      Reply
  14. Naomi
    June 28, 2024

    These cupcakes are SO delicious! They don’t even taste GF. I’ve been gluten free for years and was so happy with this recipe! We use coconut sugar for the batter and frosting, which works well. They were a hit at the last few gatherings we’ve served them at (even to non GF people ;). Thank you!5 stars

    Reply
    1. Claire Cary
      June 28, 2024

      Thank you, Naomi! So glad you loved these!

      Reply
  15. Rose
    May 18, 2024

    Incredible. Tested these day for my son’s 5th bday party, and although I usually eat gf/df, I often cave and use gluten/dairy when baking for others. Well, these are so amazing, there is no need to cave. Both son and hubs agreed – amazing.
    I used slightly less powdered sugar in the frosting, just did it to taste. Otherwise, this recipe is perfect as is – trust 😉
    Thanks for sharing this winner.5 stars

    Reply
    1. Claire Cary
      May 20, 2024

      Amazing! Thank you Rose, so glad you found a winner!

      Reply
«Older Comments
1 2 3 4 5 6
Newer Comments»
claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


Read Claire’s Story

you’ll also love

  • Gluten Free Cakes & Cupcakes

    Gluten Free Mini Cupcakes

  • Gluten Free Cakes & Cupcakes

    Flourless Chocolate Cake

  • Gluten Free Desserts

    Vegan Gluten Free Chocolate Cupcakes

  • Gluten Free Desserts

    Matcha Cupcakes

  • Gluten Free Cakes & Cupcakes

    Chocolate Protein Cake

  • Gluten Free Cakes & Cupcakes

    Gluten Free Marble Bundt Cake

claire cary of eat with clarity

get more clarity

"✦" indicates required fields


More

  • About
  • eBook
  • Disclaimer
  • Privacy
  • Services

Recipes

  • Recipe Index
  • Breakfast
  • Desserts
  • Dinner
  • Drinks

As Seen In

  • Buzzfeed
  • Yahoo!
  • Well + Good
  • Parade
  • Self

Site by Katelyn Gambler & Made To Thrive

COPYRIGHT © 2021 · EAT WITH CLARITY, LLC. ALL RIGHTS RESERVED.

Information from your device can be used to personalize your ad experience.

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.