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Meal Type » Gluten Free Snacks » Healthy Banana Protein Muffins

Healthy Banana Protein Muffins

Claire Cary

By

Claire Cary

4.97 from 130 votes
January 19, 2024
Jump to Recipe

These chocolate chip banana protein muffins are the ultimate meal prep snack. They’re healthy, sweetened with just honey, made with almond flour and ready in under 30 minutes.

banana protein muffins on a wire rack

I’ve been on a bit of a protein powder kick lately. I love adding it to smoothies of course, but lately I’ve been loving it in pancakes and now these banana protein muffins.

These muffins are the perfect recipe to have on hand for quick snacks, whether after school, post-workout or when the late night chocolate cravings hit.

Protein powder is great for baking because it can help turn a very non-nutritious recipe into a very nutritious one! As far as which one is best, I like pea protein, but if you are not dairy free, whey is great too!

They’re naturally gluten free, dairy free, oil free and ready to eat in about 30 minutes. Try my protein cookie dough, healthy chocolate chip cookies or protein overnight oats next!

ingredients in bowls with labels

How to make banana protein muffins

Preheat the oven to 350 degrees Fahrenheit. Line a muffin tin with 10 liners and set aside. In a large mixing bowl, whisk together all wet ingredients.

Whisk in the dry ingredients, aside from the chocolate or nuts if using. Fold in the nuts or chocolate chips.

Scoop into the prepared tray, filling each liner about 3/4 of the way up. Bake for 18-24 minutes or until a toothpick comes out clean. Remove from the oven and let cool completely before serving.

two images showing how to make the batter

Key Ingredients & substitutions

Banana puree. This is one of the key ingredients that add moisture to these banana protein muffins and help naturally sweeten them. Be sure to use very ripe and spotty bananas and puree them instead of mash them. This is key for the texture- same with my mini banana muffins!

Almond & oat flour. We’re using half almond flour and half oat flour, but you are welcome to use all of one or the other if you prefer. The texture is best with half of each, but it will work with all of one. Same with my gluten free chocolate muffins!

Honey. Honey will help add some sweetness to the muffins without tons of added sugar. I have not tested these with maple syrup, but I imagine that would work as well.

Protein powder. I use a vanilla pea protein for this recipe, which I recommend. You can use other kinds of protein such as whey, but I recommend sticking with vanilla for the best flavor. You want to make sure it has stevia or some kind of sweetener for the best flavor. We’ll be using 1/2 cup of protein powder, which adds just the right amount of protein, but not so much that the texture is negatively impacted.

Eggs. The eggs help bind all of the ingredients together, add moisture and add some extra protein!

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muffin batter in the muffin tray

Can you bake with protein powder?

Yes! I love adding protein powder into pancakes, baked protien oats, muffins, protein donuts, cookies and even chocolate cake. I don’t recommend adding it into a traditional recipe, it’s important to follow a recipe that already calls for protein powder for best results.

Protein powder sort of acts like flour in baked goods, it will absorb excess moisture and add structure. When used in the right amount, it will keep the recipe nice and fluffy and flavorful.

banana protein muffin with a bite taken out with the wrapper in the back

How to store and freeze

To store: Once prepared, these banana protein muffins will keep at room temperature for 3-5 days. I like to store them in a container or a ziplock bag to keep them moist.

To freeze: I have not tried freezing them, but I do think that would work well! Be sure to let them cool completely, then transfer to a freezer safe bag and freeze for up to 1 month.

To reheat: If frozen, let the muffins defrost in the fridge, then reheat until warm through the center at 300. If they were simply in the fridge or at room temp, just pop in the microwave for a few seconds to warm them up!

banana protein muffins with chocolate chips on top

Can I make them vegan?

I have not tested these without the eggs, and to be honest, I don’t think the texture would turn out very well. If you do choose to make them vegan, my suggestion would be to use two flax eggs or add in an additional 1/2 cup of banana puree.

They won’t rise as much as they do with eggs or be quite as fluffy, but the flavor will still be delicious.

banana protein muffins with a bite taken out with melted chocolate

Try these next!

  • Matcha Muffins
  • Almond Flour Blueberry Muffins
  • Gluten Free Zucchini Muffins
  • Sweet Potato Muffins
  • Gluten Free Banana Bread Cookies
  • Carrot Cake Muffins
  • Protein Brownies
  • Gluten Free Pumpkin Muffins

If you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, tag me on instagram if you make this recipe so I can see your creation!

4.97 from 130 votes

Banana Protein Muffins

by: claire cary

These chocolate chip banana protein muffins are the ultimate meal prep snack. They’re healthy, sweetened with just honey, made with almond flour and ready in under 30 minutes.
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
10

Ingredients

Wet

  • 1 cup banana puree
  • 2 eggs
  • ¼ cup honey
  • 1 teaspoon vanilla extract

Dry

  • ½ cup blanched almond flour
  • ½ cup oat flour
  • ½ cup vanilla protein powder see notes
  • 2 teaspoons baking powder
  • ½ teaspoon cinnamon
  • ¼ teaspoon salt
  • ½ cup chocolate chips or chopped walnuts optional
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit.
  • Line a muffin tin with 10 liners and set aside. It helps to *also* spray the liners with oil as the protein powder can cause the batter to stick after baking.
  • In a large mixing bowl, whisk together all wet ingredients.
  • Whisk in the dry ingredients, aside from the chocolate or nuts if using.
  • Fold in the nuts or chocolate chips.
  • Scoop into the prepared tray, filling each liner about 3/4 of the way up.
  • Bake for 18-24 minutes or until a toothpick comes out clean.
  • Remove from the oven and let cool completely before serving.

Notes

I used vanilla pea protein, which I recommend here. You can use whey or another kind, but please stick to vanilla for the best flavor. Make sure it has stevia or another kind of sweetener, or the muffins will be kind of bland.
Serving: 1muffin / Calories: 130kcal / Carbohydrates: 17g / Protein: 10g / Fat: 5g / Saturated Fat: 1g / Fiber: 3g / Sugar: 9g

Did you make this?

Mention @eatwithclarity or tag #eatwithclarity!

Related posts:

  1. Strawberry Banana Protein Shake
  2. Protein Banana Bread
  3. Blended Protein Baked Oats
  4. Easy Protein Waffles
4.97 from 130 votes (22 ratings without comment)

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Comments

  1. Zoe
    January 8, 2026

    Do you know how much of the carbs is made up from sugar? or how I could work it out?

    Reply
    1. Claire Cary
      January 8, 2026

      About 10 grams!

      Reply
  2. Charlotte
    December 20, 2025

    These muffins are absolutely delicious! I plan to keep them in my regular rotation. This is the best way to use a protein powder (whose flavor was too strong for my smoothie). Thank you!5 stars

    Reply
  3. Ashley
    December 18, 2025

    I made mine with a chocolate flavored protein powder I use, but otherwise, I followed the recipe. super yummy!
    really only issue is I doubled the recipe and instead of making 20, it made 28! so it’s less protein in each muffin than I would like.
    but still great!5 stars

    Reply
  4. Rikki
    December 11, 2025

    These are very good definitely will be making again!!! No substitutions. I’ve been looking for recipes with protein powder so I can add more protein to daily intake..5 stars

    Reply
  5. Janet
    November 27, 2025

    My husband and I really like these muffins. I had to use flour instead of oat flour which I get hives from.5 stars

    Reply
  6. Karen
    November 20, 2025

    Easy to make, lots of flavour. Will definitely be adding this recipe to my favs!5 stars

    Reply
  7. Rebecca
    November 9, 2025

    I only had 1/4 cup banana but used 3/4 cup unsweetened applesauce as a replacement for the rest. so so good!5 stars

    Reply
    1. Claire Cary
      November 10, 2025

      Glad to know that worked out well!

      Reply
  8. Laura
    November 7, 2025

    These came out really nice. I didn’t have flavored/sweetened protein powder. I did 1/3 cup honey and 2tsp vanilla to compensate. The muffins had enough flavor, and the texture was pretty good for not having regular flour. Will be making again.4 stars

    Reply
  9. Renee
    November 5, 2025

    yummy! I forgot the cinnamon but they were still yummy. Making another batch to share with friends this time with cinnamon👍🏽5 stars

    Reply
  10. Amy Finegold
    November 4, 2025

    These are by far the most amazing protein muffin recipes EVER. They taste like cupcakes and my entire family loves them. Can’t wait to try more of your recipes. 🥰5 stars

    Reply
    1. Claire Cary
      November 6, 2025

      Thank you, Amy! Can’t wait to see what else you make.

      Reply
  11. Karen C.
    October 30, 2025

    Wow!! These muffins exceeded my expectations!5 stars

    Reply
  12. Misha
    October 30, 2025

    I am usually scared to make recipes with protein powder due to the texture and taste, but WOW are these delicious! I can’t recommend them enough! I will definitely be remaking these. I subbed honey for maple syrup, only had oat flour (so used a full cup of that), and used Vega Protein + Greens vanilla protein powder. Also topped them each with a whole walnut and they look so cute 🙂5 stars

    Reply
    1. Claire Cary
      November 3, 2025

      Thank you, Misha! So glad you love them!

      Reply
  13. Lina
    October 21, 2025

    I love them! Soft and juicy! Thank you!5 stars

    Reply
  14. Alex
    October 19, 2025

    10/10, I do protein diets and this is an amazing recipe to make!5 stars

    Reply
  15. breah
    October 15, 2025

    SO YUMMY! Really quick, easy recipe with all clean ingredients! Highly recommend 🙂5 stars

    Reply
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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