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Meal Type » Gluten Free Snacks » Healthy Banana Protein Muffins

Healthy Banana Protein Muffins

Claire Cary

By

Claire Cary

4.97 from 130 votes
January 19, 2024
Jump to Recipe

These chocolate chip banana protein muffins are the ultimate meal prep snack. They’re healthy, sweetened with just honey, made with almond flour and ready in under 30 minutes.

banana protein muffins on a wire rack

I’ve been on a bit of a protein powder kick lately. I love adding it to smoothies of course, but lately I’ve been loving it in pancakes and now these banana protein muffins.

These muffins are the perfect recipe to have on hand for quick snacks, whether after school, post-workout or when the late night chocolate cravings hit.

Protein powder is great for baking because it can help turn a very non-nutritious recipe into a very nutritious one! As far as which one is best, I like pea protein, but if you are not dairy free, whey is great too!

They’re naturally gluten free, dairy free, oil free and ready to eat in about 30 minutes. Try my protein cookie dough, healthy chocolate chip cookies or protein overnight oats next!

ingredients in bowls with labels

How to make banana protein muffins

Preheat the oven to 350 degrees Fahrenheit. Line a muffin tin with 10 liners and set aside. In a large mixing bowl, whisk together all wet ingredients.

Whisk in the dry ingredients, aside from the chocolate or nuts if using. Fold in the nuts or chocolate chips.

Scoop into the prepared tray, filling each liner about 3/4 of the way up. Bake for 18-24 minutes or until a toothpick comes out clean. Remove from the oven and let cool completely before serving.

two images showing how to make the batter

Key Ingredients & substitutions

Banana puree. This is one of the key ingredients that add moisture to these banana protein muffins and help naturally sweeten them. Be sure to use very ripe and spotty bananas and puree them instead of mash them. This is key for the texture- same with my mini banana muffins!

Almond & oat flour. We’re using half almond flour and half oat flour, but you are welcome to use all of one or the other if you prefer. The texture is best with half of each, but it will work with all of one. Same with my gluten free chocolate muffins!

Honey. Honey will help add some sweetness to the muffins without tons of added sugar. I have not tested these with maple syrup, but I imagine that would work as well.

Protein powder. I use a vanilla pea protein for this recipe, which I recommend. You can use other kinds of protein such as whey, but I recommend sticking with vanilla for the best flavor. You want to make sure it has stevia or some kind of sweetener for the best flavor. We’ll be using 1/2 cup of protein powder, which adds just the right amount of protein, but not so much that the texture is negatively impacted.

Eggs. The eggs help bind all of the ingredients together, add moisture and add some extra protein!

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muffin batter in the muffin tray

Can you bake with protein powder?

Yes! I love adding protein powder into pancakes, baked protien oats, muffins, protein donuts, cookies and even chocolate cake. I don’t recommend adding it into a traditional recipe, it’s important to follow a recipe that already calls for protein powder for best results.

Protein powder sort of acts like flour in baked goods, it will absorb excess moisture and add structure. When used in the right amount, it will keep the recipe nice and fluffy and flavorful.

banana protein muffin with a bite taken out with the wrapper in the back

How to store and freeze

To store: Once prepared, these banana protein muffins will keep at room temperature for 3-5 days. I like to store them in a container or a ziplock bag to keep them moist.

To freeze: I have not tried freezing them, but I do think that would work well! Be sure to let them cool completely, then transfer to a freezer safe bag and freeze for up to 1 month.

To reheat: If frozen, let the muffins defrost in the fridge, then reheat until warm through the center at 300. If they were simply in the fridge or at room temp, just pop in the microwave for a few seconds to warm them up!

banana protein muffins with chocolate chips on top

Can I make them vegan?

I have not tested these without the eggs, and to be honest, I don’t think the texture would turn out very well. If you do choose to make them vegan, my suggestion would be to use two flax eggs or add in an additional 1/2 cup of banana puree.

They won’t rise as much as they do with eggs or be quite as fluffy, but the flavor will still be delicious.

banana protein muffins with a bite taken out with melted chocolate

Try these next!

  • Matcha Muffins
  • Almond Flour Blueberry Muffins
  • Gluten Free Zucchini Muffins
  • Sweet Potato Muffins
  • Gluten Free Banana Bread Cookies
  • Carrot Cake Muffins
  • Protein Brownies
  • Gluten Free Pumpkin Muffins

If you want more recipes straight to your inbox, be sure to subscribe to my email list. As always, tag me on instagram if you make this recipe so I can see your creation!

4.97 from 130 votes

Banana Protein Muffins

by: claire cary

These chocolate chip banana protein muffins are the ultimate meal prep snack. They’re healthy, sweetened with just honey, made with almond flour and ready in under 30 minutes.
/ /
Prep: 10 minutes mins
Cook: 20 minutes mins
Total: 30 minutes mins
10

Ingredients

Wet

  • 1 cup banana puree
  • 2 eggs
  • ¼ cup honey
  • 1 teaspoon vanilla extract

Dry

  • ½ cup blanched almond flour
  • ½ cup oat flour
  • ½ cup vanilla protein powder see notes
  • 2 teaspoons baking powder
  • ½ teaspoon cinnamon
  • ¼ teaspoon salt
  • ½ cup chocolate chips or chopped walnuts optional
US Customary – Metric

Instructions

  • Preheat the oven to 350 degrees Fahrenheit.
  • Line a muffin tin with 10 liners and set aside. It helps to *also* spray the liners with oil as the protein powder can cause the batter to stick after baking.
  • In a large mixing bowl, whisk together all wet ingredients.
  • Whisk in the dry ingredients, aside from the chocolate or nuts if using.
  • Fold in the nuts or chocolate chips.
  • Scoop into the prepared tray, filling each liner about 3/4 of the way up.
  • Bake for 18-24 minutes or until a toothpick comes out clean.
  • Remove from the oven and let cool completely before serving.

Notes

I used vanilla pea protein, which I recommend here. You can use whey or another kind, but please stick to vanilla for the best flavor. Make sure it has stevia or another kind of sweetener, or the muffins will be kind of bland.
Serving: 1muffin / Calories: 130kcal / Carbohydrates: 17g / Protein: 10g / Fat: 5g / Saturated Fat: 1g / Fiber: 3g / Sugar: 9g

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Related posts:

  1. Strawberry Banana Protein Shake
  2. Protein Banana Bread
  3. Blended Protein Baked Oats
  4. Easy Protein Waffles
4.97 from 130 votes (22 ratings without comment)

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Recipe Rating




Comments

  1. Tonya
    April 6, 2026

    These are amazing. They cooked faster than I expected and were dark brown at the minimum time mark. I think the banana caramelized quickly. I added walnuts and no sugar Lily’s chocolate chips. Delicious.5 stars

    Reply
  2. Kai
    April 6, 2026

    These are delicious, love the recipe but I’m curious where you’re getting the 10 grams of protein in each muffin? I put all the ingredients into my macro counter and followed your exact recipe and they’re coming out with 4-5 grams per muffin but all the rest of my macros match yours … is this just a mistake?5 stars

    Reply
    1. Claire Cary
      April 8, 2026

      What protein powder are you using? Should definitely be closer to 8-10!

      Reply
  3. Skyler
    March 25, 2026

    These muffins are literally my holy grail! I’ve tweaked the recipe a little bit to make them more moist by adding more banana and some applesauce, but they are genuinely so so so good. I made a batch of these muffins when I did a 24 hour running challenge, and I can say with 100% confidence that these muffins are the only reason why I finished LOL (I may or may not have eaten the whole batch…) SUCH a great recipe!5 stars

    Reply
    1. Claire Cary
      March 25, 2026

      Love to hear it! Thanks, Skyler.

      Reply
  4. Larissa Lampitelli
    March 24, 2026

    I made one before and they were perfect, this time the dough is really thick. More of a cookie consistency, any recommendations?5 stars

    Reply
    1. Claire Cary
      March 25, 2026

      Did you make any changes? Could just be the way the flour was measure- make sure you are spooning to level, same with the protein powder.

      Reply
  5. Cindy
    March 13, 2026

    These muffins are fantastic! They are super moist and delicious. The recipe is easy to make, too. Thank you for sharing.5 stars

    Reply
  6. Zoe
    February 24, 2026

    These muffins are delicious, moist, and feel like a total treat—a healthy one! For the last two months I’ve been making this recipe. I always double the recipe and once cooked, immediately freeze a little over half of them to keep on hand as a healthy and satisfying snack. They freeze beautifully!! From frozen, I pop 2 in the microwave for 10 seconds then put in the toaster oven and the taste fresh baked all over again. Perfect pre-workout or afternoon pick me up snack. My mom, recovering from surgery, also loves these muffins as a tasty and easy source of protein. All around love!!!5 stars

    Reply
  7. Melanie Turenne
    February 24, 2026

    Great base for different mix ins!
    I have made this recipe several times with different variations.
    1. Chocolate protein powder + walnuts
    2. Vanilla protein powder + strawberries
    3. Peanut butter chocolate protein powder + almond extract
    Each time they’ve been amazing!
    I brought some to pickleball and had many friends ask me for the recipe. A friend whose son is gluten free, lactose free and egg intolerant also loved them (she subbed applesauce and cornstarch for the eggs). Twice the protein and half the calories of grocery store muffins, and just as tasty!5 stars

    Reply
    1. Claire Cary
      February 24, 2026

      Love these variations! So glad they’ve been a hit, thanks Melanie!

      Reply
  8. Shelly Gaudreau
    February 15, 2026

    Make this once a week, very delicious! I was wondering if you can make this with blueberries?5 stars

    Reply
    1. Claire Cary
      February 17, 2026

      Yes, definitely! I’d use fresh blueberries.

      Reply
  9. Anna
    February 14, 2026

    I absolutely love this recipe. I actually leave out the honey because I feel the muffins are sweet enough without it, and I use nuts instead of chocolate chips.5 stars

    Reply
  10. Angela
    February 13, 2026

    delicious! great snack!5 stars

    Reply
  11. Danielle Lowe
    February 11, 2026

    Absolutely AMAZING & delicious i already can’t wait to Make again thank you for this amazing recipe. It was perfect. & easy i am obsessed !5 stars

    Reply
    1. Claire Cary
      February 12, 2026

      Thank you, Danielle!

      Reply
  12. Brittany Boverhof
    February 5, 2026

    These muffins are great! I used King Arthurs Measure for Measure Gluten Free flour, and froze them the second day. Definitely saving this recipe!5 stars

    Reply
    1. Claire Cary
      February 9, 2026

      Thank you, Brittany!

      Reply
  13. Cheryl
    February 3, 2026

    I couldn’t find Oat flour in my local store, so I just used almond flour. I doubled the recipe. I used Whey Vanilla Protein Powder.and sugar free choc. chips. These came out great. I will definitely be making these again. My only question is is there away to increase the protein content either by adding greek yogurt or cottage cheese?

    Thank you for such a great recipe.5 stars

    Reply
    1. Claire Cary
      February 3, 2026

      You can swap about 1/4 cup of the banana puree for either greek yogurt or cottage cheese, but obviously this will change the flavor a bit!

      Reply
  14. Amy
    January 28, 2026

    Hi, these look delicious! Can I make them with regular wheat flour?

    Reply
    1. Claire Cary
      January 29, 2026

      You would probably only need about 3/4 cup, but I cannot test my recipes with wheat flour so I can’t guarantee the result!

      Reply
      1. Beth
        February 8, 2026

        I’ve made them with 1/2 oat, 1/2 Einhorn whole wheat flour. It makes them denser. They’re still delicious though!! I could probably could cut it down to 1/4 whole wheat flour but I forget EVERY TIME until the second I dump it into the bowl.5 stars

        Reply
  15. Claire Smith
    January 21, 2026

    Hi there, I’ve doubled up the recipe but it’s incredibly wet – it’s more pouring than scooping into the muffin tin. Any suggestions? Thanks!

    Reply
    1. Claire Cary
      January 22, 2026

      Did you make any swaps? Have you made it before without doubling?

      Reply
      1. Sara
        May 8, 2026

        Could I use 1.5 cups of protein powder instead of all the flour?

        Reply
        1. Claire Cary
          May 11, 2026

          No, that won’t work here unfortunately!

          Reply
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claire cary

Welcome,
I’m Claire

Eat With Clarity is a place for gluten free recipes that are just as good as the real thing. With plenty of vegan, vegetarian and paleo options, there is something here for everyone!


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